HsaINT0185843 @ hg19
Intron Retention
Gene
ENSG00000171649 | ZIK1
Description
zinc finger protein interacting with K protein 1 homolog (mouse) [Source:HGNC Symbol;Acc:33104]
Coordinates
chr19:58099907-58103758:+
Coord C1 exon
chr19:58099907-58100033
Coord A exon
chr19:58100034-58101378
Coord C2 exon
chr19:58101379-58103758
Length
1345 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CAGCGGTTCTCTGCTTTCAGGTT
3' ss Score
9.18
Exon sequences
Seq C1 exon
GGCTGTGTGACCTTTGAGGACATCGCCATTTACTTCTCACAGGACGAGTGGGGACTTCTTGATGAGGCTCAGAGACTCCTGTACCTTGAAGTGATGCTGGAGAACTTTGCCCTTGTAGCCTCACTGG
Seq A exon
GTAAGGCCCTAATACCAACTCCAGTGTCCTGGTCTGTCTATGGTCTTTTGCTGACTTCTCCACTTTCTTGGGATATGTGCTATGGGATCCAGCACTGTGCACTGCCTGAGTAGCCCTAACACCTGCTGCCCAGTGGTCTGGGAACACCTGCTGCCCAGTGGTCTGGGAACACCTGCCACTGGGCAGCAGGTGTTCTTCAGTCAGCCAAATGGATCTCTGTTCCTTGCTCTCTTCTTGGCTGGGTGTCTGTGTTCAGATCCATGACACCTTGTGTCCCAAGTTCCCTGCACCCCCATCTGCTAGCTGACATTTTCTTGTGGCTACCTGTGTCATGATTGTAGTCATTGTCATTGTCTATACTTATGGGGACAATGGGCTCTTCTTACTCACTCCTTCTAGTTTGTTTGTTTGTTTGTTTGTTTAATGATATTAACTTTCTTGCCCATGGGCTGTTGTGTGCTGAGTCGTTCTGCATCAGTGCTGATCACTCACATGTTCTGTCTTTCTGGTAGGACTTGGCTTCATGAAGGTCCCACATAGCTAGACAACTGAGGGTGTGCAGAGAAACCTGGTTGCTTTATAGGGTGAACATGGTCTCAGAGAAGGCCTGGGCTTGTTGAGTGGCAACTGGTTGGGGGCATGATATCCGGGCTGTTTTCCGATCACATAAGGAGCCTGTCCTGTCTTCACCACTGTTTGGGTGCACATGCCACTGGCCAAATCTCATTTCTATATTTTCTTCTCAGTACTTGACACTTCTCTCTCTTATTATTTTTATCTATGACTTCTAGCACCTGGCTACCTCCACCTTTCTGATCTTCATGCATCATCTGCTTCTCTGCACTGCTCCCTCTGCAATGTTTTCCAACATTGACACACACATAATGTCTCATGAAGTATGTATATATGACCACATGAAGATATGTGATCATATCACTTGCTACTCAGTTTCAATTGTATTTTCCTGGGCTTGGGCACAGTCAACCTTCTGCACAGCATGCAGGTGTCACCAGCAGACAAGGTCCTCCTGAAGACTATGTGGTGAGTTTTAGGAATTGGAAGGCTACTCAAGGATAATTTTTGAGGCTGTTGGTAGAGGAATGGTTTGAAGGCAATGCCATTCCCTGTCCTTCATCCCATCCTTGTGTCCTTTATTTGGTGAGGCCTCCCTCATTCTGTGATCTTTAGAGATCCAGTATTGCAAAGCAACCCCTTCCTCAACTTGCCCCCAGCTCCATTATCCTCAAAACAAACCTGGTGAATCATTCGTTTGGTATGTGTGTAATGGGGCTTCTTGCTCTCAGCATAGTCAATGTATATTTCATCAGCGGTTCTCTGCTTTCAG
Seq C2 exon
GTTGTGGCCATGGAACAGAGGATGAAGAGACACCTTCTGACCAGAATGTTTCTGTAGGAGTGTCACAGTCAAAGGCAGGTTCATCCACACAGAAGACTCAATCCTGTGAGATGTGTGTCCCAGTCCTGAAAGATATTTTGCATCTAGCTGATCTCCCTGGGCAGAAACCATACTTGGTTGGAGAATGTACAAACCATCACCAGCACCAGAAGCATCACAGTGCAAAGAAATCCTTGAAGAGGGACATGGACAGAGCCTCATATGTGAAGTGCTGCCTATTCTGTATGTCATTGAAGCCCTTTCGCAAATGGGAGGTTGGAAAGGACCTTCCAGCCATGTTGCGGCTTCTGAGGTCCCTGGTCTTTCCTGGAGGCAAGAAACCCGGCACAATTACTGAATGTGGGGAGGACATTCGCAGTCAAAAAAGTCATTACAAGTCAGGTGAATGTGGGAAGGCTTCCAGGCACAAACACACTCCTGTTTACCATCCAAGAGTCTACACTGGAAAAAAGCTTTATGAGTGTAGCAAATGTGGGAAAGCCTTCCGTGGCAAGTACTCACTTGTTCAGCACCAGAGAGTCCATACTGGAGAAAGGCCTTGGGAGTGCAATGAATGTGGAAAATTCTTTAGCCAAACCTCCCACCTGAATGATCATCGGAGAATCCACACCGGAGAAAGGCCTTATGAGTGCAGCGAATGTGGAAAATTATTTAGACAAAACTCCAGCCTTGTTGACCACCAGAAAATACACACTGGAGCAAGGCCTTATGAGTGTAGCCAGTGTGGGAAATCCTTTAGCCAAAAAGCCACCCTTGTTAAACACCAAAGAGTTCACACTGGAGAAAGGCCTTATAAGTGTGGTGAATGTGGGAATTCCTTTAGTCAAAGTGCCATTCTTAATCAACACCGAAGAATTCACACTGGAGCAAAGCCTTATGAGTGTGGCCAGTGTGGGAAATCCTTTAGTCAAAAAGCTACCCTCATTAAACACCAGAGAGTTCACACTGGAGAAAGGCCTTATAAGTGTGGTGACTGTGGGAAATCCTTTAGTCAAAGCTCCATCCTTATTCAACACCGGAGAATTCATACTGGAGCAAGGCCTTATGAGTGTGGCCAGTGTGGAAAGTCCTTTAGCCAAAAGTCTGGTCTCATTCAACACCAAGTGGTTCACACTGGAGAAAGGCCTTATGAGTGCAACAAATGTGGGAATTCCTTTAGCCAATGCTCCAGCCTCATACATCACCAAAAATGTCATAACACATAGAGGCCTCATGAATGCAGCAAATGTGGAAGCGCCTTCAACTCAAGATCTATCATCATTTAGCTCCTGAAAGTCCACACTTAAGTAGAGCCTTAGACCTACAGGGAAAGTGCTGTCTCTGTAGTATTGTAGCAGTAGAGAGCCTTTGTGAGGGAGCCATCTGCCTGAAGTTGAACCTCATTCTTCCTTGTTTCTCTGGTAGAAACCATCTACCCTCTACCACCTTGCACAGTGGGCACTGGTCACTCCTATGTGCTAAGACAAGGCAGACATCTGTGTGTTCTCTTAAGTCTTTGGAGGAAATCTTGAGCAGTCTAAGCCTTTAGAGAAAATTCATTCTTTTTTCTGACTGATCACAGCATACGTGTGACCCAGTTTGGGTCAGGAGGGCCCAGCCTTGGTTCTGCTGGACACTTATGTGCAAGGATTCCCTTCATGTAAATTCTTGGTCTCACATGACACTTGGTCATTCTTCCAGCCTCCATGTCACCACGTGGTGAATGGCTGCCTCACATTGCTCCAGTTTGTGCACTAATAAAAGCCTTATATTTGAATCTACCTGTAGTCTTGGGGTTCTGTTTACTGTGTGGGGTGGCTGGGAGACAGACTTCAACTCTATATGAAGGAATGGATGGCTTTTGTGGGCCTCTGCAGGAAAGTAAGATGACAGAGTAATTCTAATTCTGGTTTTGGTCATACTTGCTTTGCTACCTAAAATCTCCTAGGAAAAAATGCAAGGTTTTGGTTATTCTAATTTGTGGCCTGGATCCCTATTCTTTCTGTGAGACTAGAGGTCATCCTGAGGAGAGGCCAGCTGTTATGACAAGCATGTGTGCTTCAGGGAATAGGACAATTTTATTCCATTGTTTCCAGAGGATGTCATATGATGCCCAGTGCTGCTGAGAAGCTTTTCATGGGGTTCTATAAGGAGGCATGCCCTGATATCAAACATTCCATAGGCCGATGTCACGCAGAAGACAACGCGAGTCACATGTGAACTGTAATTGGTACAGAAATACCTGGGTATTTCTGTACTGTGTGTACTGTAGCAAACTAGTTGGAATGTGCCTCTTATAAAAGTACATTTACAAATCTTCCCGTGACTGTGGCTTTGAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171649-ZIK1:NM_001010879:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.140
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF132401=zinc_ribbon_2=WD(100=8.8),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=6.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGTGTGACCTTTGAGGAC
R:
ATGCTTCTGGTGCTGGTGATG
Band lengths:
342-1687
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)