BtaINT0165702 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003447 | ZNF551
Description
zinc finger protein 551 [Source:HGNC Symbol;Acc:HGNC:25108]
Coordinates
chr18:65291985-65294264:+
Coord C1 exon
chr18:65291985-65292111
Coord A exon
chr18:65292112-65294105
Coord C2 exon
chr18:65294106-65294264
Length
1994 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
CAGCATTTCTCTGCTTTCAGGTT
3' ss Score
8.87
Exon sequences
Seq C1 exon
CAGGGTATGAAATTTGAGGATGTGGCCATTGACTTCTCCCAGGAGGAGTGGGGGCTCCTGGATGAGGCTCAGAGACTCCTGTACTACAGTGTGATGCTGGAAAACTTTGCACTTGTAGCATCCCTGG
Seq A exon
GTAAGACCTTCACATCCTTCCTCGTGTTCTGAGATGTCCTGTTTTCCCGTTTTCCCATGAATTAGCATTGTCTTTCCCACAGCTGGACCACAGGCTCTCCTGACTTCCTCCGCTTTCTTGTCAGATGTGCTGTGGATGCCAGCACTGAGCTGTGTGTAGTGCTCTGAGCAATGGACTCCCCAAGCAGCCTTAACACCTGTTGCCTCCAGAAGGGCAGAGATGGGTCTGGGAGTCAGGAGTCTAGCAGGCCACCTAATAAATCCCATCCTGCTTGCCGTCTCCCTGGTGGAGTGACTACATCCAGATCCTCGGCTGCCGGAGTCCAGCTCCAGCAGCCAGGGAATCAGCCTGAAGAGATGAGCGGTGTCAGCGGAGAATGATGCAGCCTCTGACTCAAGGTGTGGAACTGCATGTTTATTTCAAGCATCAGGTTTTCTTTTATACTTTGACAAAAGCATTAGGTCAGAGGTTTGACATTTTCAGCTCCCCCTGACCCAGATTTATTATCTTCATAAATCATTGTTGCCCTTCAACCAGAATTACATTGTAATTCATGCTTATATCTGGGTTGCATACCACATCCCTCAGTTTATTTCTTATCTTTCTAAATCCTGCTTGCCCCTAGTATCCTAAGCTCACTATCTCCTAAAAAAGCTTCTAGCTATTCTTAATTATTCCTAAACCCTAAGCTCAGCAAACTTCCTTTGTCATAAACATTCCCCCCACAAACAGGTCTCAGATAACAATCCTTCCCATGGTCTCAAGCTGAGGCCTACATGCTCATCCTGGAACATTCTTTGTAAAGATCCTTGAACAAATGTCAATGCTTACTTTATGGATTATTTTCTGGGCACAACTGCAGAAGGCTTTGTGCTTTCTCATGCTTCTCTCAAGAACAATAAGCACCTTAACATTCTTTCCAGCCAACTCAACCAAAGAAAGGAAAAAACAAGTCAGAATCACAAGACCTAACTCCTTTATCCTGGGACCATGCCTGCAGGATGATGAGAGGGGGTTGGGGCCGTGCCTCCATTTTGTCAGTAATGCCTAATGCGGCTCCCGACACCTGGTCTCCAGTTCTTCCCCCTTCTCCTAGCTAAGAGTTCTTTGTGACTGCTTGTGCCAGGTCATGGTCATTACTTACATGAACCATGGGCTGTTCTTGGAAAACTCTCCTTCAGTTGTTCTTTGTAATGTTTTCTTTACTGAATACTGTCAATGCCTAGTTGCTCAAAGCCAGTGCTAGCCACTCATTGATGCTACAATCTTTTATAAGACTTGAAGTATTAAGGTTCTGAGTAGTTACACAGTGGAGGGTACAGAGAGAATCCTAGTTCTTTCAGACTAGACATGGTGAGATGGTCTCAGCAGAGAGCCTCCTGGGCCTGGGGCGTGGCAGCTGGGGGAGGACATGACATCATGGCTGTTTTCAGATCGAATCAGGAACCTGCCCTGTGTCCAGGAGTGCCTTTGGCCATACCTCATTTCTGCCTTTTCCCCATACCTGACACTTTGCTGTCTTGTCATTTCATCTGTGACTTCCGGTTCCTGACCACTTTCACCTTTGTAGCTTCCATGGATCACCTGTTCCTCTGCACTGCTCCCTCTGCAGTGTTCTCCCACATTGACCTGCATGTGTATCATGAGGTGTGCACATATCCTTAAATAGCCCTTGAATCCTGGTCACTCAGGACACAACCAGCTTTCCCCACAGCAGAAGGTTTTTGGCAGAGAAAAGAGTTGGAGACCTTGCCTCCGTGCCATGTGGTGCACCCCATCCTTGTGTCCTTTGTCTGGTTAGGTCTCCCCTATTCTATGATCTTCACAGGCCTGCCCACTGATGCCAAGCAACCACTTCCTCAGTTTGCCCCCAGCTCCCGTTTTTAGAAAAAACCCATGATTCATTCTCAGCTGTGTCTGACACACCTTTATAATGGGTCTTTCCTCTCCCACCAAAGTCAACATGCATTTCCTCAGCATTTCTCTGCTTTCAG
Seq C2 exon
GTTGTTGCCATGGAACAGAAGATGAAGAGGCCCCTTCTGAGCAGAGTTTATCTGTAGAAGCAGAGTCACAGGTCGGGGTTTCCAAGGCAGGTCCATCCATCCAGAAGATCCACCCCTGTGAGATGTGTGTCCCCATTTTAAAAGATATTTTACACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003447:ENSBTAT00000013096:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.185
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGTATGAAATTTGAGGATGTGG
R:
TGGGGACACACATCTCACAGG
Band lengths:
262-2256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development