HsaINT0187619 @ hg19
Intron Retention
Gene
ENSG00000204519 | ZNF551
Description
zinc finger protein 551 [Source:HGNC Symbol;Acc:25108]
Coordinates
chr19:58196630-58201169:+
Coord C1 exon
chr19:58196630-58196753
Coord A exon
chr19:58196754-58197848
Coord C2 exon
chr19:58197849-58201169
Length
1095 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CAGCATTTCTCTGCTTTCAGGTT
3' ss Score
8.87
Exon sequences
Seq C1 exon
GGTATGACCTTTGAGGATGTGGCCATTTATTTCTCCCAAGAAGAGTGGGAGCTCCTTGATGAGTCTCAGAGGTTCCTGTACTGCGATGTGATGCTGGAGAACTTTGCACATGTAACATCCCTGG
Seq A exon
GTAAGGCCCTAGCATCCCTCCGAGTGTCTGCTTTTCTTTTTGACCCCAGAGTTACCTCTGTCTCAGGAGTCTTGCTGTCAGCCTAGTGGATCTTATTTTTCTTGTCTTCCCCCTGTCAGGATGACTGTGTACAGATTCATGGTACCTTGTGGCCCAGTTTCTGCCCTTTTCCTCTAGCTGCCATTTCCTTATGTCCACCTATATCAGAAATTACAGGCATTGTCATAGTTACTACTTATGTGAACTATGGAGCTCTTTTTACAAGACTCTCCTTTGAGTGTTTTTTGTGAGTGCTGGTCACTCCCTTGTCCTCTCTTTCCTTAAGACTTACATCATTCATGTGTTATGTGGTAGCACAATGAGGGCTGCAGGGAGAGCCCTAGTTGCTTCACAGAGTGAACAAAGCAAGATGGTCTCAGAGGAGGCCTGGCCCCAGTGAGTGGCAGCTGGGGAAGGGCATGACATCATGGTTGTATTAGAATCATATCCGGAACCTGTGATGTGTCCAGCAGTATTTTGGTGCAAGTGCCACTGGCCATAACTCGTTTCTACTTCTACTTCCCTATACAATACTGTGCTGAATTGTTGTTTCATCTGTCACTTCCAGTGTTTGGCTACCTCCACCCTCGTGGTCTCAGTGTGTCACTTGTTCGTCTCCACAGCTCACTTCTTTTCAGTGTTGTTCAGTCTTGACTCACTGTGTTGTGAGGTATGCACACAGCCTCAAATAGTCCTCCTTGATCACCAGCTATCAAGTTTCAATTGGATTTTCCTAGGACTGGACAACAGCAGTCTTCTGTACAGCACATACATCACTAGCAGACAAAGTCCTGCTGAGGGCTTTGGCAGAGAGTGAGTTGGAGACCCTCCTTCTCCTCCTGTGCTATACCTCATCCTTGTATCCTTTGCGTGATGAGATGACATCTCTAAAATCTTAAAAAACCCAGTACTTCAAACCAGCCTATTCCTCCCCAGTTCCGTTGTTCTCAGAACAGTTCCATGCACTCAGTTCTTGTGTCTCACACATTTTTGTGATACATCTTTCTCCTTCCATGAAAGTCAGCATGCATTTCATCAGCATTTCTCTGCTTTCAG
Seq C2 exon
GTTATTGCCATGGAATGGAGAATGAGGCGATAGCTTCTGAGCAGAGTGTATCTATACAGGTCAGGACTTCTAAGGGCAATACACCCACCCAGAAAACTCACCTCAGTGAGATTAAGATGTGTGTCCCAGTCTTGAAAGACATTTTGCCTGCGGCTGAGCACCAAACCACATCCCCTGTGCAAAAGTCATACTTGGGTAGCACAAGCATGAGAGGCTTCTGCTTCAGTGCTGACCTTCACCAGCATCAAAAGCATTACAATGAAGAAGAGCCCTGGAAAAGGAAGGTGGATGAGGCTACATTTGTGACCGGCTGCAGATTCCATGTGTTGAATTATTTCACCTGTGGGGAGGCCTTCCCAGCCCCCACGGACCTACTCCAACACGAAGCCACTCCCAGTGGTGAGGAGCCACACAGTAGCAGCAGCAAGCATATACAGGCATTTTTCAATGCAAAAAGTTATTACAAGTGGGGTGAATACAGAAAAGCTTCAAGCCACAAACACACACTTGTTCAGCATCAGAGTGTCTGTTCTGAAGGAGGGCTTTATGAGTGTAGCAAATGTGAGAAAGCCTTCACTTGCAAGAACACACTTGTTCAGCACCAGCAAATTCACACTGGACAAAAGATGTTTGAGTGTAGTGAATGTGAGGAATCCTTTAGCAAAAAGTGCCACCTAATCTTACACAAGATAATTCACACTGGAGAAAGGCCTTATGAATGCAGTGATCGTGAGAAAGCCTTTATCCATAAATCTGAATTCATTCACCACCAGAGACGTCACACTGGAGGAGTGCGTCATGAGTGTGGTGAATGTAGGAAAACCTTTAGCTACAAATCTAACCTCATTGAACACCAGAGAGTTCACACTGGAGAAAGGCCTTATGAATGTGGCGAGTGCGGGAAATCCTTTAGACAAAGCTCTAGCCTTTTTCGACACCAGAGAGTTCACTCTGGAGAAAGGCCTTATCAGTGCTGTGAGTGTGGGAAATCCTTTAGACAAATCTTCAATCTCATTCGACATAGAAGAGTTCACACTGGAGAAATGCCTTATCAGTGCAGTGATTGTGGGAAATCTTTTAGCTGCAAATCGGAACTCATTCAACACCAGAGAATTCACAGTGGAGAAAGACCTTATGAATGCAGAGAATGTGGGAAATCCTTTAGACAATTCTCTAACCTCATTCGACACCGCAGCATTCACACTGGTGATAGGCCTTATGAGTGCAGTGAATGTGAGAAATCCTTTAGCCGCAAATTTATCCTGATTCAACACCAAAGAGTTCACACTGGAGAAAGACCTTATGAATGCAGTGAATGTGGAAAATCCTTTACCCGCAAATCTGACCTCATTCAACACCGGAGAATTCATACTGGCACAAGACCTTATGAGTGCAGTGAATGTGGCAAATCTTTTAGACAGCGCTCTGGCCTCATTCAGCACCGGAGACTTCATACTGGAGAAAGGCCTTATGAATGTAGTGAATGTGGAAAGTCTTTTAGCCAAAGTGCTAGCCTCATTCAACACCAGAGAGTTCACACTGGAGAAAGGCCTTATGAATGTAGTGAATGTGGGAAATCCTTTAGCCAGAGCTCTAGCCTCATTCAACACCAGAGAGGTCACACTGGAGAAAGACCTTATGAGTGCAGTCAATGTGGGAAACCCTTTACCCACAAATCAGACCTTATTCAGCACCAAAGAGTTCACACTGGAGAAAGGCCTTATGAATGCAGTGAATGTGGGAAATCCTTTAGCCGCAAATCTAACCTCATTCGACATCGGAGAGTTCACACTGAAGAAAGGCCTTAAATGTGAAGGGAATGTGCTATTTCTTTATTCAGTATAATAGCACTGGAGGAGACTGTGGTAGCCATCTTCGTAAATTTAAACTTTGAGCACCCACAGTGGGGTATTCTTCATAAGTTTCAGGTATGTGGGAAGCTCTGAGGAGGTTCATTGTAATTTCTAATCTGCCGAGGCCTATAGCCTGATTTATGTCACTGCCAATTTCTGAGGCTGAAGCCATTTCACATTTCACCCCTACCACCTGGCAGGTGCACACCATGTGCATGAGTCACTTCCCCACAGTGCTCAGAGAAGCAAACCTCTGTACTCTCCCATTTGCTTGGGGAAATTATTAATAGCCCAAGCATGTAGGGTCTTCATGTCTTTTCTCTGACTTTAGAGTATACACCTGACCCAGTTGTGGTCCAGAGAATCTGAGTTGTGCTGTCAGCTTTCTAAGGATTACTTTTTTAAGGAACATTGTCGGTCTCACATGATGCTTGTAATGAATTTTTCCACATTCTGATTCACCAGCCTGGAAACTGCTTGGTGCACATTGCTTTAATTTATAATGTTTTTATAAAGGTTTTAAAAAAATTTACGCACCTTTAATCTTGGGTGTTCTATTCATTGCATAGAATGACTTGTAAGCAGAATAGTGATGTCAGCATGAAGGGGTGAATAGATTTTGTGGAGATCTCAAACTTTCTGTACTCAGAAGGGACAATGTGATGGCAGAAGACAGCTCTTTGTTCTGTATTGCTCTAATTGGCCTGCTGCCCAAGGCCTCAAAGTAAAGACTGCCAGGCTTTGTGTTCCTGTATTGTGGCCTGGTGCCATTTTTGTCAGGTCAGAGGTCACCATGAAAAGGAGGCAGTTGTGACAATCCCCAGTGCTTCTGTGAACGTGAATTTTGTTCAGTTGTCCACAGGAGATCCACATAATTCCTAGCACTGGTGAGGGGAATCTGTTGCCCAGGTCCTGCAAAGGAGCCAGGTGCCATGGCATATAAGTCAGTGTAGACTGGTGCCATTTGTTGTCAGACTATAGGTGTGGAGGTGAAATTACAGGTTCAACAGTAATTGGGACAGAAACTCCAGGTAAATGGGGAGTGGAGAAGACTGCAGTAAATTAGATGGAATGACTCTTCTAAAAGTTCATCTACAAATTTTCCAGTGAATATGGTTGTGTAGGATCAGTGCATACAGAAATTCTCAGGATCTTCTGTTTACTATCGCTGAGATCATTATCAGAAAATAGTCTGGCCGGGCATGGTGTAATCCTAACACTTTGGGAGGCCAAGGCGGGCGGATTGCCTGAGCTCAGGAGTTCAAGACCAGCCTGGGCAACATGGTGAAATCCCATGTCTACTAAAATACAAAAAATTAGCCAGGCGTGGCAGCATGCGCCTATAGTCCCAGCCACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGAAGGCGGAAGTTGCAGTGAGCTGAGATTGCACCACTGCACTCCAGCCCAGGCAACAGAGTGAGACTCCGTCTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204519-ZNF551:NM_138347:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.130
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGATGTGATGCTGGAGAAC
R:
TGCAGCCGGTCACAAATGTAG
Band lengths:
358-1453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)