RnoINT0000374 @ rn6
Intron Retention
Gene
ENSRNOG00000047230 | AABR07002134.1
Description
zinc finger protein 551 [Source:NCBI gene;Acc:682964]
Coordinates
chr1:66898946-66904539:+
Coord C1 exon
chr1:66898946-66899065
Coord A exon
chr1:66899066-66900352
Coord C2 exon
chr1:66900353-66904539
Length
1287 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
ATGTATTTCTCTGATTTCAGGTT
3' ss Score
9.19
Exon sequences
Seq C1 exon
TGTCCTTTGAGGATGTGACCATTCACTTCTCCCAGGAAGAGTGGGTGCTCCTTGATAAGGCCCAGAGACTCCTGTACTGCAATGTGATGCTGGAAAACTTGGCACTTGTGGCATCTCTGG
Seq A exon
GTAAGGTCCTTGCATGGCTCCCAGTGTCCAGGGTTTCATCTACCTTTTTACCTGAAAGTAATTGCTAACTTAGGAGTCATAACAAGTCTCAAACTTTCCATAAGGCCTATTCCCTTGGTTTCTGCCTATTTCATGGAGTTGTCTTTTCCTTTTTTTCTTTTTTCTTTTGTTTTTTCTTGCTTTTTTGAGTCTCTTTCTATACATAGCCCCAGATGTATATGGAACTCACTACTAGGTAGACTAGGCTGGCTTTGAACTCATAGAGACTACCTTTTCTCTGCCTCCTGAACGCTAGAATTAAAGACATGCACCAGGCTTAGTTGTCATTTCCATGGCTGCCCTTCGTGAGAAATTGCCAATATTGTCACATTATTTTAAAATGAATCGGGAGATATTCTTGAAGGACTCTTTTACGGTATTTTGTTATGTTTTCTTTCCTATGTAGTATTTTATATTAATTTGCTATGAGTTAGTGTGGGTCACTCACTCTCTCTCAATATTTACATTTACATTTCCCATGTGGTTAGGGATGAGGAAAAGTCTTGATTGCTTCATAGAGTTGAGAAGGCAAGATTATCTTAAAGGAGACCAGATCTTGTGGTAGGCATCCAGAGAAGGCCATGTTTACTTTATATCAGGAGGCAGCAGAGTGCCCACAGTGTTTTAGTAAAGGAGTTATCCATATCTCATTTCTACCACCTTTACTCCTTGTTTAATTCTTTGGCATCTTGTGATTGCACCTGCAACTTTTGACTCTTGGCTACCTTGATGCTCTGCTGCTTGTTAGTTTTGACATAAGGTGTTATAAGGTACTTATACAGCTTTCATTAGTCCTTGATCACTAACTTCATTTGGGGGCTTTTGCTCAGTATAGATAGATCACCAAGAAACAGTCTGGTGGAGGCTGTTGGCTGAGAAATTGCGTGGAGACCCTGCTTGTCTTTTCCTATACCTTATTCCTATGTGTTTTGTCTGATGTGATATACCCCATTCTGTATTTGAAAGCAGCTCCCTCAGTATGTCTGCAGCTCTTTTGTTTTTAGAACACTTCAGTGCGTTCATTGCCTCTTCTCCATTTTTTTTCTGGGATAACCCCTTTTCTATGTAGCACAGGCTAACCTCAGACTTATAAGCCCTTTGCCTTAGATTGCCAAGTGTTTAGAGTAAGGTGTAATCTAAATCCAGCTGTTTTTTTGCTTTTTTTGTGTCTAGCTTACCTTTGTGATGGACTTTTCCCTCTCCAGCATGATTTCATTAGCATCTCCACATGTATTTCTCTGATTTCAG
Seq C2 exon
GTTCCTGCACTGGAATGGGGAGTAAAGAGGTAACTTGTGAGCCTAATGCACCTGCAGAAGGGGTGGTATGTAACAAAAGTCCAATTCCCCAGGAGAGTCATCTCTTTGAGATACCTGTCCCAGCTTTGGAAGACATTGTGCACCAGACTGAGTTCCTAAGCACACATCCTGTTCTGACATTGGGCTCAGGCAGAACAGGTTCCTGTTTAAATGAAGACAATAACCAGTATCAGAAGAGTTACAGTGGAGGAAAGTCCTGTGAAAGGGATCCTGACAAGGCTTCAGCTATGTCAAGCTGCATATCCCATGTGTTGACCAAGCCATTCATCTGTGGGAAGGATGGGGAGGAGGCCCTCACCTCTACAGTCTGTCTTCAGCAACAGGGTGCTTGTCATAGTGAACAGCCCTCCACAGGCTGTCTTCAGCAGCAGGACACTTGTAGTAATGAACAGCCTCACAGCAGCAGCAAGAGTGGGGAAGCACTTTTGAATGGAAAGAAACATTGTAAGGGCAGTGAATGCCAAAAAGTTTCAAGCTGCACACAGGGACTTGTTCAGTGTTCAAGTGCCTCCTCTGAGAAAAGGCCGTCTGAGTGTAGCAAGTATGAGAAAGCCTTCTCCTGCAATTACAAACTTGCTCAGCACCAGGACAGTCATCCGGGACAAAGGACATATGAGCACACTCAGAATGAGAAGTCCTTCAGAAAAAAGTGCCGCCTCAACACACAAGACAGAATTTGTCCTCAAGAAAGGCCCTTTAAGTGTACTGAATGTGGAAAAGCCTTTATCTATAAATCTGAACTCATTTACCATCAGAGACACCACAGTGGTAGAGTACACTATGAGTGTAAGGAATGTAGAAAGTCTTTCACCTACAAATCCAACCTCACTGAACACCAGAGAATCCACACTGGGGAAAGGCCTTATCAGTGTGAACAATGTGGCAAATCCTTCAGACAAAACTCTAGCCTCTTTAGACACCACAGAATCCATACTGGAGAAAGGCCGTACGAGTGCTATGAATGTGGGAAATCCTTTAGACAGATATTTAATCTCATCAGACACAGGCGAGTCCACTCTGGAGAAATGCCTCACCAGTGTGGCGATTGTGGGAAAGCCTTTAGCTGCAAAGCTGAACTCACTCAACACGAGCGAATTCATAGTGGGGAAAAGCCTTATGAATGCAGCGAGTGTGGAAAATACTTCAGGCAGTTCTCCAACCTCATTCGACACCGGAGAGTACACACTGGTGACAGGCCTTATAAGTGCAGTGAATGTGAGAAATCCTTCAGTCGCAAATTCATCCTCATCCAGCACCAAAGAGTTCACACTGGAGAAAGGCCTTACAAATGTGGGGAGTGTGGCACATCCTTCACCCGGAAATCTGACCTCATCCAACACCAACGAATTCACACTGGCACGAGACCCTATGAGTGTGAAGAGTGTGGGAAGGCATTCAGACAATGCTCTAGCCTCATCCAGCACCGAAGAGTTCATACTGGAGAAAAGCCTTATGAGTGTATCGAATGTGGGAAAGCCTTTAGTCAGAGTGCTAGCCTTATTCAACACCAGCGCCTGCACACTGGAGAAAGACCTTATGAGTGTAGTGAATGTGGGAAGTCCTTTAGCCAGAGTGCTAGCCTGATTCAACACCAGAGAAGCCACAGTGGAGAAAAGCCTTATGAATGTAGTGAATGTGGCAAGCCCTTCACCCATAAGTCTGACCTGATTCAGCACCAAAGGGTTCACACCGGAGAAAGACCTTATGAGTGCCATGGCTGTGAGAAATCCTTTAGCCGTAGATCGAATCTTGTCCGACACCAGCGAGTTCACACCTAAGAAGAGTCTTTATCATGTAAGAAATGTGCTGCTTAGGATGTTCTTTATCACAGTACATAGGCAAAAAATGCATGAAGATGTATGCCTGCTCCTGATTGGGCAAGGCTGGTAGGTATGCAGCCTTGTGGGTTTTGCTTTTATAAGCACCTGACTAACATAAATTGGTGCCATTCTCTGAGCATCCCAGGTAAGTACCTGGCCAGTGTCCATCATCCTGGCCAGTATTTAATAAAACTTCTTTCAAATTTGGCTCCAAAAAAAGTGCTGATTTACAAGTGTAGTAACACTGGGGTAGACTCACAGCCCTCTCTGAGTTCAAAGATTCATTTAAGTTTCAGAAGTGGAGGTTATTTCAGATATGTGGGAAACTTTGAGGAGACTCATTCCAGTTTTTAGTATGCCCAGGGTCATGTCCAGATTTATACCTTTTGCAGTGTCTGTGGTAGAAACCCTGTTACTCTTAGCACCTGGAGGATTAGGAGGCTGACTGTCCCTGCTGAGTGCTTAGCGATGCAGACCTCTTTACACTGCTCCGGCCTTAGCTTTGGAGACCCCTCCTTTCCTTACAGGGTGGTAATCTTATTTAGAAAGTGTGGTTTGAGTTGTGCTTTCAACTTTGCTAGGAAGGATAACCTTGTTCAGGACAGATTTTGTTCTCACACCTTGCTCCTGATGAATATTTCCAGGCTGGAACCCACCAACTTGTGAGATGCTTTACTCTCACCTAACTTTTGAAAAGGGAGTTTGTTTATGCTCCTTTGATCTTAAACGTTCTGCTCACTCTGTGCTGTGACTTACCAGCCGACCTGTGATGTCAGCATGAAGGGGTGGACCAATTTCATCGATTTCCTCACTTTCTGTTTGAAGCAGCTGTGTGGAGTATTGGTCTAATTTTCATGGCTGCACCTACCCTCACAGGAAAGACTTTTTTGGGTTTTGTGTTCCTGACTTACTGAAGTGATTATGATTTTTGAGAGGTAAGAAGTCTTCACGAAGAGGTGTGTTATGACAACCCCAGGTACTTCTGTGCCACCTGAACAATTCTGTCCACTTTTCCACCAGGATGTCACATAATTCCTAGCATTGCTGAGGGTAGTCTCTTCTGCTGGCCTTGTACTGGAGCCGTTGGCTATGTGCTGAATAGTGTATAGGGTAGCAGTTTGTGATTAGGACAGGAACTGAGTTAATGGATGCAAAGATAATACTGCATTTCTTTATTATGCATATATGTGGCTTGCTTCACATGGACTGTAGTACTTGTATGGAGGTCAGAAGGCAGCTTTTGGAGTTGATTCTATTCTACCATGTGGGCTCCAGAGATTGCATTCAGGTCATTAGCCTTTTGGTGAGCCCTTTCACCTACTGAGCCAACTCTCTGACCCTGGAACATGCTTCTATTAAAAGTTCACCCACAGATGCTCTAGTCATTTTGTGTGAGTTGACAAATTCTCAAGCTCTTTTTAGCTATTTCCTGTGGCTCTGGTTTTTTTGTCAGAGAAAACAGTGAAATGATTTTGTGGATTCCTATATTCCCCCAGTTCTGCCATAGGCCAAAGTTGTTCAATCAGAAAAACAAGGTGAGGAAGAAGATTCTGTGGGGTGGGGTATAATTCTGACCTTACTTGTGATTTGAAGGGTAGTAACTTTTATTACTTACCAAGACTGGCTGTCGGTGGAGCAAGGCTATGATTCTCAGATTCTGAGTAGAAAGATGATGGAACCCATATCAGGTTGTGAAAATGTTTTGAGAACAGCAGGGCATCTAGGTATACTGTTTTGGGCTAGTTTTCACGGCATTATTTCTGTATCATCTGCATGATTGATACTTAAAGGACATAGCATGGCACTGTGGCATGTGCTTGGAGTTCAAATTTCTAGAAAGGCAGAAGAATGAGGAGTCTATGAGCCCAGGAGTTTGTGGCTCATTGGGAGCAACATAACATGACTCTATCTCAAAAACAAAACCTCAATTTGGTAAAGCCTTGAAATCATTACAGTTATAAAAGCGAATTTACCTGTCATCTATATATTTATAATGTGCCCCTTTATTAGCATTTCCTACCTCTCCTGGAAACCAGTGATTTTGTTTTTAAACTTTAACTTTTAGGTGTATGGGTATTTTCTCTGCATGTATGTATATGTGCCTAGTGCTTGGGAGGCCAGAAGAGGGAGAAGGACTGGAGTTACAAATAGTTGTGGGCCATCGTGTGGATATTGGGAACTGAATCCAGGTTTCGTGGAAGAACATCTAGTGGTCTCAACTGCTGAGTCACATCTTCAGACTCTGCTTTTTCTTAAGCAACATATTAGTTTACATGATTTAGAATTTTAAATTATTGCCTTCAAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047230:ENSRNOT00000074063:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF0009621=zf-C2H2=WD(100=3.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCCCAGAGACTCCTGTAC
R:
GCTGAAGCCTTGTCAGGATCC
Band lengths:
350-1637
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]