HsaINT0186265 @ hg19
Intron Retention
Gene
ENSG00000179909 | ZNF154
Description
zinc finger protein 154 [Source:HGNC Symbol;Acc:12939]
Coordinates
chr19:58211810-58216347:-
Coord C1 exon
chr19:58216221-58216347
Coord A exon
chr19:58214157-58216220
Coord C2 exon
chr19:58211810-58214156
Length
2064 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
ATAATTGTATTTCATTGCAGATG
3' ss Score
9.39
Exon sequences
Seq C1 exon
GGCACTGTGACCTTTGAAGATGTGGCCGTACACTTCTCCTGGGAGGAATGGGGTCTCCTTGATGAGGCTCAAAGATGCCTGTACCGTGATGTGATGCTGGAGAACTTGGCTCTTTTAACCTCTCTAG
Seq A exon
GTAAGGTTCTTTTACCCTTTCCTGTGCCCTGAGCTAGTCTGTGCCCTTCCTCTTTTCTCTATAGGCAGGTCTGTCCTTCTCATGACAAGACTATGGGCTCTGCTTCTTTCTCAGTTCCCTGCATAGTTCTGTCATTGGTAAGACTAAGGTGTGCATACTGTCTTCTCCTCTCCTTGAGGAGCCCCAGTACCTGTTTCCTCACAGCCTCACAGGGAAGGATTCAGAGTCTGCAGTCTTGCAGTCACCCTAGTGGATCCCACCTTGATTGTCCCCTCCATGTCTGGGTGACTTTTTCCAGATTTGAGGATCCTGTGTGCCCCAGCTACTACTTCCATCCCGAGCTGGCATTTCATTATGCCTGCCTATGCCAGGAGTTATTGTCACTGACATGGTCACTACTTATGTAGACCATGGACTCTTCTTACAAAGTATTCCTCTGAAATTTTCTTTGTAGTATTTGTGTGTGTGTGTGTTTTTCCTGTGGGCTGTCATGTGCTGAGTTTTTTGTGGGACAGTGCAGGCTGCTCTTCTGTTCTTTCTTCCCTTAGTACTTACATTATCCAGATGCTGTATCAGAGCAGCAACCTGTTCTGTTTGGCGAGCATTTTGGTGCCAATGCCAGTGGTCACAGCTCACTTCCGGTTTCCCTTCACCATTCTTGACATTTTGCTGACAAGTCAGCTCTACTACTTGTCACTTCTGCTCTTAACATCCAGCCTGGGGCTAATCCTCACATCTCTGGACTCCGTATCTTATCTGTTTTTCTCACTGCTACACCTGCAGTTCTTTCTAACGTTAGCCTCTATATAGTGTGTCATGAGGTATGCACATACTCTTTTTTTTTGAGACGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCATGATCTCGGCTTACTGCAACCTCTGCCTCCCAGGTTCAAGTAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGTGATTACAGGCGCATGCCACTGCACCTGGCTCATTTTTGTATTTTTTTAGAGATGGGGTTTCACCATCTTGACCAGGCTGGTCTTGAACTCCTGACCTTGTGATCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCGCCTGTCCTTGCACATACTCTTAAACAGTCCTTGAAGGCCAGCTGCTGCATTGCAGTCGTATTTCCATGGGCTTGCATATACTATTCTACATAGCACTCATGTGTCGCCAGCAGATAAGCTTCTGCTAAAGTTGTTTGCAGAGGATTTAGTTTTAGACCCTGCCTCTCTCTTTGTGATACCTCATGGTTGTGGCCTTTACCTCTTGAGATCTCCCACATTCCTGTAATCTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCCTTCTGTCACCCAGGCTGGAGTACAGTGGTGCAATCTTGGCTCGCTGCAACCTCCGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTCCTGGGACTACAGGCACCCACCACCATGTCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATATTGGCCAGGCTGGTCTCAAACTCCTGACTTTGTGATCCACCCACCTTGGACTCCCAAAGTGCTGGGATTACAGATGTGAGCCACCGCACCCGGCCCATTCTTGTAATCTTTATCCTAGAATTGCTAAACAGCCTCATCTGCAACTGAACCCAACTCTACTGTCATGCAAACGATCCCATGGACTTGTTCCTGGGTTTGTCATACACACACTTGTATAAGGGCTGCCCCCTCCCACCATAGTTAATGTGCACTTCACTAGCATTTCTTGCTTTTAGGTTTTTGGCATAGAGTGGTGGATGAGGAGGCACCTTCTGACAAGAGCATTTCTTTAGAAGGAGTGACCCAACTCAGGACTTCTAAGGCAGATCTTTCTCCCTAGAAGGCCCACCACTGTGAGACGTGTAGCCTGGTCTTGAGAGACATTTTGCTCTTGGCTGGGCCCTAGGGGACACATCATAGGCAGAAATTATATAGAGGTGGGGCATGTGGGAAATAATTGTATTTCATTGCAG
Seq C2 exon
ATGTTCATCATCAGAAGCAGCACCTTGGAGAAAAACATTTCAGAAGCAATGTGGGCAGAGCCTTGTTTGTGAAGACCTGCACATTCCATGTGTCAGGGGAGCCTTCCACCTGCAGAGAAGTTGGGAAGGACTTCCTGGCCAAGTTGGGATTTCTCCATCAACAGGCTGCTCACACTGGGGAGCAATCAAATAGCAAAAGCGACGGTGGGGCCATCAGTCACAGAGGAAAAACTCATTACAACTGTGGAGAACACACAAAAGCATTCAGCGGTAAACACACACTTGTTCAGCAGCAGAGAACCCTCACTACAGAAAGATGTTACATATGCAGTGAATGTGGGAAATCCTTTAGCAAAAGCTACAGTCTCAATGACCATTGGAGACTTCACACTGGAGAAAAGCCTTATGAATGTCGAGAGTGTGGGAAGTCCTTTAGGCAAAGCTCTAGTCTCATTCAGCACCGGAGAGTTCACACTGCAGTACGACCTCATGAATGTGATGAATGTGGAAAATTATTTAGCAACAAGTCTAACCTCATTAAACATCGGAGAGTTCACACTGGGGAAAGGCCATATGAGTGCAGTGAATGTGGGAAATCCTTTAGCCAAAGGTCTGCACTCCTTCAACATCGGGGAGTTCACACTGGGGAGAGGCCTTATGAGTGCAGTGAATGTGGGAAGTTTTTTACATATCATTCCAGTCTCATAAAACACCAGAAAGTTCACAGTGGATCCAGGCCTTATGAGTGCAGCGAATGTGGGAAGTCATTTAGCCAAAACTCTAGCCTCATTGAACACCATAGGGTTCACACTGGAGAAAGGCCTTATAAGTGCAGCGAATGTGGGAAATCCTTTAGCCAAAGGTCTGCACTCCTTCAACATCGGGGAGTTCACACTGGGGAGAGGCCTTATGAGTGCAGTGAATGTGGGAAGTTCTTTCCCTACAGCTCCAGTCTCCGAAAACACCAGAGAGTTCACACTGGATCAAGACCCTATGAGTGCAGTGAATGTGGGAAATCCTTTACTCAAAATTCCGGCCTCATTAAGCACAGGAGGGTTCACACTGGGGAGAAGCCTTATGAGTGCACGGAATGTGGGAAATCCTTTAGCCATAACTCCAGCCTTATTAAACATCAGAGAATTCATAGTCGATAAAAGCCTTATGAGTGGCAAATGTGGAAAATCTGTTAGCACCCTGGAGAAAGTCCTTGAGTACACAGTGAATGTCAGAAAGCTTCAGCTGAAGGCCATATCTCATTGAGTGCCACACAGTTCACAAGGGAAAGACACTTTTGATATGTAGGGATGTCCAGTTGATATAACAGCTCTGAAGGAGATCCCTTATGAGGGTGGCATCAGCCTGAATTGAACATCCTATATCTGAACATCTGCATAAATTCCAGGTATGTGTGAACTGCATTGCACCTTTTGCCCTGCCCAGGGCCCATGTCAGATTTATGTCTCTGCTGATACTATAGTGGAAGCCATTTTACCTCTACTGCCTGGCAGGTGACCACCAGTGTGCACCACTCACCCATCCCAGTGTATTCAGGTAAGTGAACCTTGGTGTTCTGTTCATGGGAGGAATTTGTAAATAGCCTAAGCATTTATTCCGTTTTTTTTTTTTCCTTTCTGATGAGTTAGGCCATGGACCTGACCCAGTTTGGCCCAGAGGACTCTGCTGGTGACCTGAAAAGAGGGACTACATATTTCAGGATATTGTTGGTCTCACATGACTCTTGATAGAGTTTGCCAGCCTTCAAATCACCAACTGTGGGAACCAACTGCCTCTTATTGCCTTGGTTTGTACAATAACAAAGGCCTTATTAATCTTGGGGGTTCTATATGTATGGGTTGGTTTGAAAACAGTTGGGTTCTGCTAACATGAAGGGGTGAATAACTTTTTTTGGAGATCCCAAACATTGTGTAGCTCAACAGGGACAGGGACAGGGACAGTAGGATGGCAGAATATAGCTCTCTCTCTAGTTTGAGCCTAGTTTTCATTGCTATTCAAGGCCTCTGAGAAAAAACTACAGGGTATTGTCCTAATTTATATCCTGGATGCCATAGAGGTCAGCCTGAGGAGGCAGCAGTTACTTGACATCCTTTGATGTTTCTGAAAGCAACATGAAATTGTTCTCTTGTTCACAAGGAATACTGCATCGTGTTCAGTGCCAGTGGGGGAAATCTGTTCCCCAGGTCCTGTATGCCTTGATATCCTGAATTCCACAGGGTAGCACCACAGGTGGTAAGATTATAGTAGGAATTATAATTGTTATAGAAGTACTGGATTGATAGAGAGTGGAAAACTGCAATAACACTGCAATAAATAGAATGTGCCCCTTTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179909-ZNF154:NM_001085384:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF0013017=C1_1=WD(100=13.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF0013017=C1_1=WD(100=13.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF0013017=C1_1=WD(100=13.5),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)