MmuINT0179447 @ mm9
Intron Retention
Gene
ENSMUSG00000034071 | Zfp551
Description
zinc fingr protein 551 [Source:MGI Symbol;Acc:MGI:3588205]
Coordinates
chr7:13000497-13004015:-
Coord C1 exon
chr7:13003892-13004015
Coord A exon
chr7:13002568-13003891
Coord C2 exon
chr7:13000497-13002567
Length
1324 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
ATGTATTTTTCTGATTTCAGGTT
3' ss Score
9.25
Exon sequences
Seq C1 exon
GATGTGTCCTTTGAGGATGTGGCCATTCACTTCTCCCAGGAAGAGTGGGTGCTCCTTGATAAGGCCCAGAGACTCCTGTACTGCAGTGTGATGCTGGAAAACTTGGCACTTGTGGCATCTCTGG
Seq A exon
GTAAGGTCCTTGCATGGCTCCCAGTGTCCAGAGTGGTGTCTACCGTTATTTTTACCCAAGAGTGATTGCTATCTTAGGAGTCATAACAAGTCTCAAACTTTCTCTACTGTGTCCTATGCCTTGGTTTCTGCCTAGTTCCTGTAGTTGTCATTTCTTTCTTCTTTTTCTTTTTTTTCCCTTTTGGAGGCAGTGTCTCTCTATATAGCCCCAGATATATTGGAATTCACTATGTAGACCAGGCTGGACTTGAACTCATAGAGATCTGTCTTCTTCTGCCTCCCGAATGCTAGAATTAAAGGAATGTACCAGGCTTAGTTGTCATTTCTTTATGGCTGCTTTTGTGAGGAATTGCCAGTGTTGTCATGCTTATTTTAAAATGAATTGTGAGCTATTCATGAAGGAGTCTTAAGCGTTTTGTTATGGTTTCTTTCCTATATACTATTTTAGATTAAGTTGCTATAAGTTAGTGTGGGTCACTCACATGTGTGCATTCTCTTCCTCCCTATCTCTCTTTCTCTTCCTCTCTCTCAATATTTGCATTTTTCATGTCTCATGTGTTTGGGGATGCAGGACATATCTTGATTGCCTCATAGAGTTGATAAATCAAGGTTGTCTTAAAGGAGACCGGACCTAGTGGTAGGCATGTAGGGAAGGGTATGTACATATTGTATCAGGAGACAGCAGAGTACCCACAGTGTTTTAGTAAAAGATTCACCCATATCTCATTTCTATCTTTACTCCATGTTTACAGCTTTGGCATCTTGTCATTGCACCTGCAACTTTTGGTTCTTGGCTACCTTTATGCTCTGTTGTGTTCTTAGTTTTGACACAAGATATTGTGAGGCACTTACATAGCTTTAATTAATCCTTGATTACTAGCTTCATTTGGGGACTTTTGCTCAGTGTAGACACATCCCCAATAGACACATCCTGGTGATGGCTGTTGGCTGAGGAATTGCTTGCAGACCCTGCTTGTCTTTTCCTGCATCTTATTCCTATGTGTTTTGTCTGGTGTGATAAACCCATTCTGTATTTGAAAGCAGCTCCCTCAGTATGTCTGCAGCTCTTTTGTTCTTAGAACATTCCAGTGCTTTCATTGCCTCTTTTCCATTATTTTTTCTTCTGTGACAATCCCTTGTCTATGTAGCACAGGCTAATCTCAGACTTATCAACCCTTTTGCCTCACATTCCCAAGTGTTTAGAGCATGGTATAATCTAAGTCCAGCTGTGTTGTTCCTTTTTGTGTCTAGCTTACCTTTGTGATGTGCTTTCCCTCTCCAGCATTACTTCATTAGCATCTCAACATGTATTTTTCTGATTTCAG
Seq C2 exon
GTTCCTGTACTGGAATGGGGGATGAAGACGTAACTTGTGAGCCTGCAGAAGAGGTGGTGTGTAACACAAGTCCATCTCCCCAGGAGACTCATCTCCTTGAGATACCTGTCCCAGCTTTGGAAGAGGCTTGGCACCAGAATGAGTTCTTGAGCACACAGCCTGTGCAGACATTAGATTTGAGCAGAACAGGTTCCGGTTTGAAGGAAGACAGTAACCGGCATTGGAAGAGTTACAGTGGTGAAAAGTCCTGTGAAAGGGATTCTCACAGGGCTACAGCTATGTCAAGTTGCAGATCCCATGGGTTGACTGAGCCATTCATCCGTGGGAAGGATGGTGAGGAGGCCCTCTCCTCTATAGCTGGTGTTCAGCAGCAGGGTGCGTGTCATAGTGAACAGCCCTCCACAGGCTGTCTTCAACAGCAAGCCACTTGTATTCGTGAACAGCCTTATAGCAGTGCCAAGTGTGGGCAAGCACTTTTGAATGGAGAGAAACATTGTAAGGACGGTGAATGCCAAAAAGGTTCAAGCTGCAAACACACACTTGTTCAGTGTCCAAGTGCCTCCTCTGAGAAAAGGCCATCTGAGTGTAGCAAGTATGAGAAAGCCTTCTCCTGCAGTTACAAGCATGCTCAGCATCAGGACAGTCACTCGGGAAAAAGGACACATGAGCATAGTCAGCATGAGAAGCCCTTCAGCAAAAAGTGCCGCCTCAACACACAAGACAGAATTTGTCCTCAAGAAAGGCCCTATAAATGTACTGAATGTGGAAAAGCCTTTATCTACAAATCTGAACTCGTTTACCATCAGAGACATCACAGTGCTAGAGTACATTATGAGTGTGTGGAATGTAGAAAATCCTTCACGTACAAATCCAACCTCACTGAACACCAGAGAATCCACACTGGAGAAAGGCCTTACCAGTGTGAACAATGTGGAAAATCCTTCAGACAAAACTCTAGCCTCTTTAGACACCACCGAATTCATACTGGAGAAAGGCCATACGAGTGCTCCGAGTGTGGGAAATCCTTTAGACAGATCTTTAATCTCATCAGACACAGGCGAGTCCACACTGGAGAAATGCCTCACCAGTGTGCTGATTGTGGAAAAGCCTTTAGCTGCAAAGCTGAACTCAGTCAACACGAGCGAATTCACAGCGGGGAAAAGCCTTATGAGTGTAGCGAGTGTGGAAAATACTTCAGGCAGTTCTCCAACCTCATTCGACACCGGAGAGTACACACAGGTGACAGGCCTTACAAGTGCAGTGAATGTGAGAAATCCTTCAGTCGCAAATTCATCCTCGTCCAGCACCAAAGAGTTCACACTGGAGAAAGGCCTTACAAATGTGGGGAATGCGGCACATCCTTCACCCGAAAATCTGACCTCATCCAGCACCAAAGAATTCACACTGGCACGAGACCTTATGAGTGTGAAGAGTGTGGGAAGTCATTCAGGCAATGCTCTAGCCTCATCCAGCACCGGAGAGTTCATACCGGAGAGAAGCCTTATGAGTGTATCGAATGTGGGAAAGCCTTTAGTCAGAGTGCTAGCCTCATTCAACACCAGAGACTGCACACTGGAGAAAGGCCCTATGAGTGTAGTGAATGCGGGAAGTCCTTCAGCCAGAGTGCTAGCCTGATTCAACACCAGAGAAGCCACAGTGGAGAAAAACCTTTTGAATGTAGTGATTGCAGCAAACCCTTCACTCATAAGTCTGACCTGATTCAGCACCGAAGGGTTCATACTGGAGAAAGACCTTACGAGTGCCATGATTGTGAGAAATCCTTTAGCCGTCGATCGAATCTTGTCCGACACCAGCGAGTTCACACCTAAGAAGAGTCTTCATCATGTAACATGCTGCCTAGCGTGTTCTTTATCACATCTAGGTGAGAAGGACGTAGGCAGAAAGTGCATAAAGATTTATGCCTGCCCCTGATTGGACGAAGGTGGGAAGTGTGCAGCTTTGTGGGTTTTGCCTTTATAAGCAGCTGGCTAACATAATTTGTGGCCATTCTCTGGGAATCCCAGGTTTGACCCTGGCCAGTATTTAATAAAACTTTCAAATTTGACTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034071-Zfp551:NM_001033820:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.170
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=97.6)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF0009621=zf-C2H2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF0009621=zf-C2H2=WD(100=3.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGCACTTGTGGCATCTCT
R:
CCACGGATGAATGGCTCAGTC
Band lengths:
348-1672
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: