BtaINT0165237 @ bosTau6

Intron Retention

Gene

ENSBTAG00000017872 | ZNF304

Description

zinc finger protein 304 [Source:HGNC Symbol;Acc:HGNC:13505]

Coordinates

chr18:64691262-64695901:+

Coord C1 exon

chr18:64691262-64691327

Coord A exon

chr18:64691328-64693034

Coord C2 exon

chr18:64693035-64695901

Length

1707 bp

Sequences

Splice sites

5' ss Seq

TGGGTAAGT

5' ss Score

10.24

3' ss Seq

TAGCGTTTCTTTGCTTTCAGGTT

3' ss Score

9.08

Exon sequences

Seq C1 exon

AGGAAGCTCAGAGACTCCTGTACCGCGATGTGATGCTGGAGAACTTCGCACACGTGGCCGCCTTGG

Seq A exon

GTAAGTCCCTGTTTCAGTTACCTATTGGTACATGTCAAACTACTCCAAAAGTGAGTGATGTAAAACAGTAAAAAGGCCTATGGAAGTTTCAGTGTGTCAGGAACTCGTCACAGCTCACCTGGTGCTTTTGGCTCAGGGTCTGCCATGAGGCTTCTCTCAAGCTCCCAGCTGAACTGTTCTCATCTGAAGGCCATTCTCGGGAGGATCTCACTCACAAACTCGTGTTTTGTGTTTCCAAGAGGTCATTTCTTGTGGCTTGTTGGTCAGAGACCCTTGGCTTCCTTGTCACTGTCGCCTTTCTGTAGCGCATCTCACAGCAGGGAAGGAACCTTCTCTCTGAGCAGAGAGAATGTCCAGGATGGTAGGTGGTCTTTTTCTAACCCGACCTGGAAACAGTGATCCCATCATTTTTCTCTGTTCTGTTCTTAGAAATGGGTCAGTCAGTGCAGCCTCTGGTCAAGGGAAGTGGCTCATGCAAGGGCAAGAACACCAGGTGATAGGTCTTCCTGGGCCATCGGAGAGGCCGCCTGCCACAGGCCCACATGCCTGCTGCAGTGTCCTTGGGTTCGGTTTTTCCCTGGTGCCCTGGGGGCAGCTCTTCCTGTCCTGCCAAATCAGGGGCTCTTCCCCCTCCTGTCTTGGTTCCCAGGGTAGGGGCTGTGGATGCCCAGGCACAGCCGTGGTGGCGTTCCCTCCCTGAGCAGTCGGACACCTGCTGCACAAAGCCGTTCTCGATCAGGTTAGGAGTTCAGGGCTCTGGCTGACAGTTCTTGGGGACGGACTGTGCCAGGAGTTACAGGTGCTAACAGTCACTGCTTGCGGAGGGCATAGGGGTTTTCTGGTAAGTCCTCCTTCGGGTTTTTGTTTTTTTAACATTTCCTCTTCTCTGTGGGATGGGTCTATCTGGGCCTTTCATTTGCCCTGCTTTTTTTTAATTGGAGTAGGGCTGATCCAGAATGTTGTTATTGTCTCCCTTTTTTTTTTCCACAACTTCCACCTTCCAGATCCCATGTGGTTGCCCAGTGGCAGAGAGGCAGAAAGCACCGGGTGCTTGTGGGTGGACCTGACTCCAGCCACACTGAGAGGCCAGAGAGAGCCCAGCACTGCCACACAGGAACTGAGAGAACCATCTGGGGGCAGGGTTCACGTTGTACTGTCAGCCTGTTCGCCAGTGCTTTCTTGCCAAGGCCCTTAGTGGGACCTTGCTTCTCCCTTTCCTCACCATTCCTCGCACTTGGCGTTTCTCCTGTCTTCCTTCCCTTGGCGTTTTCCCACCTCTCTGGCCTCTGTCACGCATTCTCCTCAGCTTACTCTGAAACGCTCTGTAACATTGGCTGCTTTAACGTGTTACAAGTTGTGCACATACCTGTAAGCTGTCCAGAAGAGCCGCCTACTTGCTTGCAATCAGATTTTCCTGGGCCTGGACACAGCCTCTGCACCAGGCTCACCGGACCCAAAGCCAAGGCCCTGCCGAACCCTTCTTAGAAGGGTGAGTTGGAGACCTCGCCTCTGCTTCCGGTACTTTCCACGGTCATTGTGTCTTTACCCGTCATTGAAGTCCTCCATACCTTCCAAGGCCCAGGAGTGACAATGGGCCGTCCTTCACTGATCCTGGCCCCTCATCCTGCAAAAGCGCAAGGGCTCACTCACTGGTGTGTCACACACTCAGAGCAAGCATGTCCTTCACTAGCGTTTCTTTGCTTTCAG

Seq C2 exon

GTTGTTGGTGTGAAGCAGACAATGAGGAGGCCCCCTCCGAGCAGATTGTTTGTGTAGAAGGAGTGTCAGAGGTCAGGACTCCTGGGTCCTGTCCACTTATCCAGAAAGTCCATCCGTGTGAGAGAAGTGACCCGCTCTTAAAAGACATTTTCCACTGGGCTGAACACCAGGGTTCGTGCCCTGCACAGAACCTGGACACACGTGACCCCTGTGGGCGAGGATTCCTGTTGAGTGAAAACTTTCATCAGCACCAGAAACCACATAGTGGGAACGATCCCGTCCAGGGGGATGCTGATGAGGCCTCATGTGTGAAGAGCTGTGCTGTCTATGAGTTAGGGAGACCTTGTACTTGCAGGGGGAAAGGGATGGACATGCTGGATAGCTCTAGCCTTTTCCAGCACCAGAGCACTCACAGTGGACTGAGTCCACACAGAACAGCTGAGTTTGCGGAATCATTTGCACACAAGTCGAGTCTCAGTTGTCACCAGGGAGACAGTGATGAACTGATGTTTTTCAGTTGCACTGACGATGAGAAAGCCTTCATGAACGCCTTCAGTCTCCTCGACAACCAGGTAACTCAGGCGGTTGAAGTGCAGTCCTTTAGGTGCCTACCTTGTGGAAATCTGTCCAACGAGAAATCCACTCTTATTCATCATAGAAAACTTCATGGTGGGGAAACATCACATGTGTGCAGGGAGTGTGGAAAGGCCTTCATTAACTTGTCTCACCTAAAAACTCACCAGAAATTTCACACTGGCAAAAGACAATATACATGCAGTGAATGTGGAAAGGCCTTCAGCCGCAAAGACACACTTGTGCAGCACCAGAGAGTTCACACTGGAGAAAGGTCTTATGACTGCACTGAATGTGGAAAAGCCTACAGCAGAAGCTCCCACCTCGTTCAGCACCAGAGAATTCACACCGGAGAAAGGCCTTATAAATGCAGTGAATGTGGAAAGGCCTTTAGTCGTAAAGACACACTTGTGCAGCACCAGAGATTTCACACAGGGGAAAGGCCTTACGAGTGCAGTGAATGCGGAAAATTCTTTAGCCAAAGCTCTCACCTTATTGAGCACTGGAGAATTCACACCGGGGCGAGGCCTTACGAGTGTATTGAATGTGGAAAATTCTTTAGCCATAACTCCAGCCTCATTAAACATAGGAGAGTCCACACAGGAGCAAAGTCTTATGTGTGTGGCAAATGTGGGAAGGCTTTTGGCTGCAAAGACACACTTGTTCAGCACCAGATAATTCACACTGGTGCACGGCCTTATGAGTGCAGCGAGTGTGGAAAGGCCTTTAGCCGTAAAGATACACTTGTACAGCACCGGAAAATCCACACTGGAGAAAGGCCTTATGAGTGCAATGACTGTGGAAAGTTCTTTAGCCATAGCTCCAACCTCATTGTGCACCAGAGAATTCACACTGGAGCGAAGCCTTATGAATGCAGTGAATGTGGGAAATGCTTTAGCCACAATTCTAGCCTCATTCTACACCAGAGAGTTCACAGTGGAGCGAGGCCTTATGTGTGTAGTGAATGCGGAAAAGCCTACATTAGTAGCTCCCACCTTGTTCAGCACAAGAAAGTTCACACTGGAGCGAGACCTTATAAGTGCAGTGAATGCGGGAAATTCTTTAGCCGCAACTCTAGCCTCATTCTACACCAGAGAGTTCACACTGGAGAAAAGCCTTACGTGTGCAATGAATGTGGGAAGGCCTATAGCAGAAGCTCCCATCTTGTTCGGCACCAGAAAGCTCACCCTGGAGAAGGACCTCATGAATGCGGCAGTTTTGGTGACCCTTTAGCTGCGTCTCTTAAACTTGTTTAACACCTAGAAACTTCACTGGGAGAAAGGCCTTATGAATGCAGTCAATGCACTATGTCCCTGTTCAAGATTATAGGAGTCACAGCAGCAACGGTGGGAATCATTGTTGGTACAGAGACACTGAGATAATGGAGTGGGGATGACTGAGGCTCGTGAGGATGGGTGTTGTTAAGGCAGCGTCTCTATATGTCCCTGCGATTTTGGCTCTATGGCATGAAAGTATACATAAATTCTCAGGGCCTTCACACGTCTGAGTCTCCTGTGGCCAACACACTGTCTCAGTAAGTAAAGGTTTGTGGATTCCTGTACCTCCCTGGGCTGTTGATGTTCTGGCCATCACTGCACAGGCAGGAACCCCAGCAGTGACAGAAGAAAGATCCAGGGCTCAGGCTTCTCTGACCAGCCAGCATTCCTAGTGACTAAGGTGGATGTGGCCTTCATTGCTCTGCAGTTTTTGCTGATCCTGAGGCAGGGCTTATGCTCCTAAATTGTGTAGAGAGGGATATGGTAGAACCAGAACAGTTGGCAGATGGGACTTCCCAAGAAGAGTGGTAAAAATGGATATTTATGGGGAATATTTAGCTCCTAACATCTTTGTTGAGGTATGGTGACGTGAAATAAATGGCATGTATGTAAAGTGTGAAGCGTTTTTCGTTTCAGCATGTGTATATTCTGATGAGACCACACATCAAGATAATGGAGACATCCAACACAGCCAAGAGATTGCTTGGGTCCCTTATAATCCTTTCCTCCTTGTCCTTTCTAACCCCTCTTCCCCACAATTGACAAGCAGTAGCAAGCATATTCTAGAATTTCGTGTAAACAGAATTATATACTTTGTGGAGAGTGGGGACTCTGGCGCTTTGCACCAACCATAACTTTTTGACATTAAGCCATACTGTTGCACGTATCAGTTATTCATTTGTATTGCTGAGTACTGCTCCATTGTATGGATATACCACGCGTGTTCTTTTACCCATTCGCCTGGTAGTGGGTGTTTGGGTTGTTTCTGGTTTGGCTGTTACAAATAAAGCAGCTGTG

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000017872:ENSBTAT00000023758:1

Average complexity

IR

Mappability confidence:

NA

Protein Impact

Alternative protein isoforms

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=NA C2=0.061

Domain overlap (PFAM):

C1:

NO

A:

NA

C2:

PF0009621=zf-C2H2=WD(100=3.8),PF0009621=zf-C2H2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=3.4)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSBTAP00000023758