HsaINT0186824 @ hg38
Intron Retention
Gene
ENSG00000131845 | ZNF304
Description
zinc finger protein 304 [Source:HGNC Symbol;Acc:HGNC:13505]
Coordinates
chr19:57353725-57355411:+
Coord C1 exon
chr19:57353725-57353851
Coord A exon
chr19:57353852-57355270
Coord C2 exon
chr19:57355271-57355411
Length
1419 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
GCCCTTTGTTTGCGTTACAGCTT
3' ss Score
9.05
Exon sequences
Seq C1 exon
AGTTGTGTGACCTTCGAGGATGTGTTCGTGTACTTCTCTCGGGAGGAGTGGGAACTCCTTGAGGAGGCACAGAGATTCCTGTACCGTGATGTGATGCTGGAGAACTTTGCACTTGTGGCTACACTAG
Seq A exon
GTAAGTCTGTGTTTTAGTTATCTAATGCTACATGGCAAATTATCCCAAAGCTTAGTAACTGCAAACAATAAAAATCAATTATCTCTCCAGTTTCAGTGCATTGGTAATCTGGTTAGAGCATTTTTTGTTGTTTATTATTTTGAGGGTTTTTTTTTTGTTTTTTGTTTTTTGTTTTTTCAGAGAGTCTTACTCTGTCACCCAGGCTACAGTGCAGTGTTGTGATCATGGTTCACTGCAGCCTCAAATTCTTGGGCTCAAGTGATCCCCCCCACCTCACCCTCCTGAGTAGCTGGGACTATAGGTGCATGCCACCACGCCCGGCTATTTTACTTTTTGTAGAGATAAGGTCTTGCTACGTTGCCCAGGCTGGTCTAGAGCTCCTGACCTCAAGCGATCCTTCCTCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCTTGAGCCAGTGTGCCCAGCCTGATCACACCTTCTTATGCAGGTGCTTTTGGCTCTCATGAAGTTTTAATCAAGCTCTCAGCCAGTGTTGTGGTCTTACCTGAGAAGAATCCACTTACAAGCTCACTCACATTGCTTTTTGCAAGATTTAGTTTCTTGTGGCTTGTTGGACTGTGAGCACTGTTCCTTGCTGGCTGTTGGCCAAAGTCCTCCCTCAGGTGGCCTGTCTGTATTGTACCTTATGACACAGAAGCTAACTTCTCTTTGAGCAAGTGACCAAAAGAATGTTCAAGATGGAAGCCCAGGATTGTAACCTAATCTTGAAAGTGTCATTTCATTATTTTTGCCATATTCTATTCCTTGGAAATAAGTAAGTCCATCCAGCTTACAATCAAGTGAGGAGGCTTACACAGGGGCAAGAGTACCAAGAGGTAGGGATCACTGGGACCATCTCAGAGGCTGTGTTCCACAGGCCTTTACACCCACTCCGGTGTCCTTGGTGGGGTTTGAGTCTTCTTCTCTTCCCCATGGGCCACTCTTTCTGTCCATCCAGATCCATGACTCTTCTCCTTCCCTTCTTTGTTTCCCAGAGTAGGTGCTGTGGGTTCTAGGGCTGGCTGTGTTCAGTGTTTCTGCCTTCACTGGGTAATCTGAACATCTGTTGCCCTAGAGCTTTGCAGGAAAAGGTTAGGATTCGGGAGTTTTTCAGTCTGCTAAGCAGATTCTACACAGCTCAGGTGCCCACTGCCTGAGTCCGTGTCATGATCTTTGCACCTCTTTGTCCTAGATTCTGCCCTCATCCTCTGGCTGACATTTCCTGGGGCCTGACTGTGCCAGGAATTTCAGGGGCTGACACAGTCACTTCTTGTGGTGATTACAGGGCTGTCCTGGTACATCCGCCTTGGAGAGTATTTTTTCTAAACATTCTATTTTCTCTGTGGAGTGGGTCTACCTGCGCCACTCACCTGCCCTTTGTTTGCGTTACAG
Seq C2 exon
CTTTCATTTTCCCAGTCCCATGCAGTTGCGCAGTTGGAGGGGGCAGAAAACCTTGGGTGCCTGACAGGGCAGACATCACTGCAGCCACAGTAAAGGAGACCTACAGAGGGCATGGCCCTGCTGAATGGGAGCTGGAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131845:ENST00000443917:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGACCTTCGAGGATGTG
R:
CTTCCAGCTCCCATTCAGCAG
Band lengths:
262-1681
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains