HsaEX0073390 @ hg38
Exon Skipping
Gene
ENSG00000131845 | ZNF304
Description
zinc finger protein 304 [Source:HGNC Symbol;Acc:HGNC:13505]
Coordinates
chr19:57351326-57358780:+
Coord C1 exon
chr19:57351326-57351697
Coord A exon
chr19:57353725-57353851
Coord C2 exon
chr19:57356030-57358780
Length
127 bp
Sequences
Splice sites
3' ss Seq
AGCTGTACTTATCATGGCAGAGT
3' ss Score
4.61
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
ATCGGGTCGGCTTTCTACGCGGCTCTCGTGGAACCTAGCAAAGAAAGACAGTGAAGACTGCAGGACCTTCCTTCGCGCTTTTGTTACAATCCATGACCCCTGTCGTGGGACGGGCGGCCTCTCGCGGAGGTGTCTGCCGGGGCTGGGCTCTTACCGAGGCCTCCACACACGTCCTCTTGTCCTTGTCTCCCCCAGAAGCAGCCGCCTTAGTCTTGTGAGCGTTTTTACACCGGGTAGATTGAGACTTGGAGTGCTACACTCAGCCCGAGGGCGTCCAGCGCGGTGGAGGCGTGGGGTTTCGGCTGAGCCCACAGGGCACAGACTGTTCATCCGCTTCTCATGGCAGCGGCGGTGCTGATGGACCGGGTTCAG
Seq A exon
AGTTGTGTGACCTTCGAGGATGTGTTCGTGTACTTCTCTCGGGAGGAGTGGGAACTCCTTGAGGAGGCACAGAGATTCCTGTACCGTGATGTGATGCTGGAGAACTTTGCACTTGTGGCTACACTAG
Seq C2 exon
GTTTTTGGTGTGAAGCAGAACATGAGGCACCTTCTGAGCAGAGCGTTTCTGTAGAAGGAGTGTCACAGGTCAGGACTGCTGAGTCAGGTCTTTTCCAGAAAGCACACCCATGTGAGATGTGTGACCCACTCTTGAAAGACATTTTGCACCTGGCTGAACACCAGGGATCACACCTTACACAGAAACTGTGCACACGTGGGCTGTGTAGGAGAAGATTCTCGTTCAGTGCAAACTTTTACCAGCACCAGAAGCAACATAATGGAGAGAATTGCTTCAGAGGGGATGATGGAGGGGCCTCATTTGTGAAGAGCTGTACAGTCCACATGTTAGGGAGATCCTTTACGTGCAGGGAGGAAGGGATGGACTTACCAGATAGCTCTGGCCTTTTCCAGCACCAGACCACTTACAATAGGGTGAGTCCATGCAGAAGGACTGAATGCATGGAGTCTTTCCCACACAGCTCCAGTCTCAGGCAACACCAAGGAGACTATGATGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131845_MULTIEX1-2/5=C1-5
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.028
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.3),PF0009621=zf-C2H2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=3.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCGCCTTAGTCTTGTGAG
R:
GTCCTGACCTGTGACACTCCT
Band lengths:
250-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development