HsaINT0186824 @ hg19
Intron Retention
Gene
ENSG00000131845 | ZNF304
Description
zinc finger protein 304 [Source:HGNC Symbol;Acc:13505]
Coordinates
chr19:57865093-57871265:+
Coord C1 exon
chr19:57865093-57865219
Coord A exon
chr19:57865220-57867397
Coord C2 exon
chr19:57867398-57871265
Length
2178 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
CAGCTCTTTTTTGCTTTCAGGTT
3' ss Score
9.74
Exon sequences
Seq C1 exon
AGTTGTGTGACCTTCGAGGATGTGTTCGTGTACTTCTCTCGGGAGGAGTGGGAACTCCTTGAGGAGGCACAGAGATTCCTGTACCGTGATGTGATGCTGGAGAACTTTGCACTTGTGGCTACACTAG
Seq A exon
GTAAGTCTGTGTTTTAGTTATCTAATGCTACATGGCAAATTATCCCAAAGCTTAGTAACTGCAAACAATAAAAATCAATTATCTCTCCAGTTTCAGTGCATTGGTAATCTGGTTAGAGCATTTTTTGTTGTTTATTATTTTGAGGGTTTTTTTTTTGTTTTTTGTTTTTTGTTTTTTCAGAGAGTCTTACTCTGTCACCCAGGCTACAGTGCAGTGTTGTGATCATGGTTCACTGCAGCCTCAAATTCTTGGGCTCAAGTGATCCCCCCCACCTCACCCTCCTGAGTAGCTGGGACTATAGGTGCATGCCACCACGCCCGGCTATTTTACTTTTTGTAGAGATAAGGTCTTGCTACGTTGCCCAGGCTGGTCTAGAGCTCCTGACCTCAAGCGATCCTTCCTCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCTTGAGCCAGTGTGCCCAGCCTGATCACACCTTCTTATGCAGGTGCTTTTGGCTCTCATGAAGTTTTAATCAAGCTCTCAGCCAGTGTTGTGGTCTTACCTGAGAAGAATCCACTTACAAGCTCACTCACATTGCTTTTTGCAAGATTTAGTTTCTTGTGGCTTGTTGGACTGTGAGCACTGTTCCTTGCTGGCTGTTGGCCAAAGTCCTCCCTCAGGTGGCCTGTCTGTATTGTACCTTATGACACAGAAGCTAACTTCTCTTTGAGCAAGTGACCAAAAGAATGTTCAAGATGGAAGCCCAGGATTGTAACCTAATCTTGAAAGTGTCATTTCATTATTTTTGCCATATTCTATTCCTTGGAAATAAGTAAGTCCATCCAGCTTACAATCAAGTGAGGAGGCTTACACAGGGGCAAGAGTACCAAGAGGTAGGGATCACTGGGACCATCTCAGAGGCTGTGTTCCACAGGCCTTTACACCCACTCCGGTGTCCTTGGTGGGGTTTGAGTCTTCTTCTCTTCCCCATGGGCCACTCTTTCTGTCCATCCAGATCCATGACTCTTCTCCTTCCCTTCTTTGTTTCCCAGAGTAGGTGCTGTGGGTTCTAGGGCTGGCTGTGTTCAGTGTTTCTGCCTTCACTGGGTAATCTGAACATCTGTTGCCCTAGAGCTTTGCAGGAAAAGGTTAGGATTCGGGAGTTTTTCAGTCTGCTAAGCAGATTCTACACAGCTCAGGTGCCCACTGCCTGAGTCCGTGTCATGATCTTTGCACCTCTTTGTCCTAGATTCTGCCCTCATCCTCTGGCTGACATTTCCTGGGGCCTGACTGTGCCAGGAATTTCAGGGGCTGACACAGTCACTTCTTGTGGTGATTACAGGGCTGTCCTGGTACATCCGCCTTGGAGAGTATTTTTTCTAAACATTCTATTTTCTCTGTGGAGTGGGTCTACCTGCGCCACTCACCTGCCCTTTGTTTGCGTTACAGCTTTCATTTTCCCAGTCCCATGCAGTTGCGCAGTTGGAGGGGGCAGAAAACCTTGGGTGCCTGACAGGGCAGACATCACTGCAGCCACAGTAAAGGAGACCTACAGAGGGCATGGCCCTGCTGAATGGGAGCTGGAAGAGGGTATCTGTTATGGTTGGGTTCAAATCGAACCTTCAACTTGTTTTGTGTTTGTCAGTGTTTTGTTGCCAAGGCCCATAGTGATTCTTCACATCTACTTTACTTTCCTCATTCTTGGCACTTTTTCCATTTGTCATTTCTCACGTGTCTTCCATCCTTTGGGTGTTTTCCCACTTTTCTGGCCTCCGTGTTTCAATTGCTCTCTTCAACACTAGCTTACTTTAATGTGTCATGAGTTCTGCACATTAAATAGTCCGTGAGAATGAGCTACTTATTTGGAGTCAGATTTTCGTGGGCATGGACATACCCATCTGCACAGAGCTCACCTGACACCAGCGGCCAAGGCCCTGCTGAAACTCTCTTGCAGAGGAATCAGGTAGAGGCTTCACCTATACTCCCTATACTCTATGCCATTGTTTTTAGGTCTTTACCTCATAGTCAGGGTTCCTCCATTCTGTGAGGCCCTATACTGACAACCAGCCCTTCTTTACACTGATCCTGGCCCTCTTGTCCTGCCAACAAGCCAGTGGACTCGCACTGGTGTTAGACACACATTTGTGATGGGGCTGCTGCCTCCCACCAAAGTCAGCATGCACTTCACCAGCTCTTTTTTGCTTTCAG
Seq C2 exon
GTTTTTGGTGTGAAGCAGAACATGAGGCACCTTCTGAGCAGAGCGTTTCTGTAGAAGGAGTGTCACAGGTCAGGACTGCTGAGTCAGGTCTTTTCCAGAAAGCACACCCATGTGAGATGTGTGACCCACTCTTGAAAGACATTTTGCACCTGGCTGAACACCAGGGATCACACCTTACACAGAAACTGTGCACACGTGGGCTGTGTAGGAGAAGATTCTCGTTCAGTGCAAACTTTTACCAGCACCAGAAGCAACATAATGGAGAGAATTGCTTCAGAGGGGATGATGGAGGGGCCTCATTTGTGAAGAGCTGTACAGTCCACATGTTAGGGAGATCCTTTACGTGCAGGGAGGAAGGGATGGACTTACCAGATAGCTCTGGCCTTTTCCAGCACCAGACCACTTACAATAGGGTGAGTCCATGCAGAAGGACTGAATGCATGGAGTCTTTCCCACACAGCTCCAGTCTCAGGCAACACCAAGGAGACTATGATGGACAGATGCTTTTCAGTTGCGGTGATGAAGGGAAAGCCTTCCTGGACACCTTTACTCTTCTTGACAGCCAGATGACTCATGCTGAGGTGAGACCCTTCAGATGCCTACCATGTGGAAATGTGTTCAAGGAGAAATCAGCTCTTATTAATCACAGAAAAATCCACAGTGGAGAAATATCTCATGTGTGTAAGGAGTGTGGAAAAGCCTTCATTCACTTGCACCACCTAAAAATGCACCAGAAATTTCACACTGGAAAAAGACACTATACATGCAGTGAATGTGGGAAGGCCTTCAGCCGCAAGGACACACTTGTTCAGCATCAGAGAGTTCACACTGGAGAAAGATCTTATGACTGCAGTGAATGTGGAAAAGCCTACAGCAGAAGCTCCCACCTTGTTCAGCACCAGAGAATTCACACAGGAGAAAGGCCTTATAAGTGCAACAAATGTGGGAAAGCCTTTAGCCGTAAAGACACACTTGTTCAGCACCAGAGATTTCATACTGGAGAAAGGCCTTATGAGTGCAGTGAATGTGGAAAATTCTTTAGCCAAAGCTCCCACCTTATTGAGCACTGGAGAATTCATACCGGGGCAAGGCCCTATGAATGCATAGAATGTGGAAAATTCTTTAGCCATAACTCTAGCCTCATTAAACATCGGAGAGTCCACACAGGAGCAAGATCCTACGTGTGCAGCAAATGTGGGAAGGCCTTTGGCTGCAAAGACACACTTGTTCAGCACCAGATAATTCACACTGGAGCAAGGCCTTATGAGTGCAGTGAATGTGGGAAGGCCTTCAGCCGTAAAGACACACTTGTGCAACACCAAAAAATCCACACTGGAGAAAGGCCTTATGAGTGTGGTGAATGTGGTAAATTCTTCAGCCATAGCTCCAACCTTATTGTACACCAGAGAATTCACACTGGAGCAAAGCCTTATGAGTGCAATGAATGTGGGAAATGCTTTAGCCACAACTCCAGCCTCATTTTGCACCAGAGAGTTCACACAGGAGCAAGGCCTTATGTGTGCAGTGAATGTGGGAAGGCTTACATTAGTAGCTCCCACCTTGTTCAACACAAGAAAGTTCACACTGGAGCAAGACCTTATGAGTGCAGTGAATGTGGGAAATTCTTTAGCCGCAACTCTGGCCTCATTCTGCACCAGAGGGTTCACACTGGAGAAAAGCCTTACGTATGCAGCGAATGTGGGAAAGCCTATAGCAGAAGCTCCCATCTTGTTCGTCACCAGAAAGCTCACACTGGAGAAAGAGCTCACGAGTGCAACAGTTTTGGTGGCCCTTTAGCTGCATCTCTTAAACTTGTTTAACACCAGAAAATTCACACAAGAGAAAGGCCTTATGAATGCAGAAAATATGTCATCTTGTTCATCCTCATAGGACTCACACCAGAGCAATGCTCTGTGAGTACCCTTTGTGAGGGAACCATCAGCTAGCAGATGAGCACCGTATATTCATTCCACCCTGGGGAGATTCCTGATAAGCACCACATATGTGGGAGGCTTTCATGAGGTGTGTTGCACTTTGTAACTGTCTAGAGCTCTTGATGGAATTATATCACTGCCAGTGCCTGTGGCGGAAGCCATCTTATTGCTACCAGCTGTGTGTGTCAATCACTCCATTTTGCTCAGGGAAGGCAGACTTCTGTGCTTTCTTTCCTGTTCCCTACAGGTAATCATGAATATTTTCAAGGACTTCCCCCCCCCCCCACTTCACCCCCTACCATTGAGGGTCCTCATCTTTTCCCTCATGATTAGGTTCTGAGCAAACATGATCTAGCTCTCACCAAAAGGACCTGAGCTAGGGTCTGCTGGGATTTCCTGACACGATTTTCCATCTTCATGGACAATGTTAACTGTAAACGTGATAGCTGTGACTTACTTGTCTTACTGCCAAATCGCCCAAATTTGGAACTGCTTGTCCCATGCTGCTCTGATTTATACAGTGATAAGGGCCTATTGTGGCAGTCTTTACTCTTGGGGATTTTGTTACTGTGTAGAGTGGATTGAGAAAAGAATTGGGTTCTGTCATGAAGGGAGTAGCACCTTTTGTGGGCACCACCTTTATGTGCCTCAGAGGGGACCAAAGGATGGCAGAAAACTGTTCTCAGTCTAGTTTGACCTAATTTACACTATTGCCCTAGGCTTGCTAGGAAAGACTGAAAAAATTTTTGTGCCTAACTTTGTGGCCTGGCTGCCAGGATTTCCTGTGAGCCCAGTGAGGAGGGCATAGTTGGTGCGAAAATCTCCTGTGCTTGTGGAAGCAACATAAGTTGGGTCCCTTAACTGTCACGTACTCCCCAGCACTGTTGAGGGATTGCTGTCTTCTGTACCTGTACAGGATCAAGTCCCTGATATCCAGAACCCCATAGGCAAGTAACATTGACTGTAAGACCTCTGTAGGGCAATGTGAAAATCATGATTGCTACAGAAGCACTGAGATAATGGAGTGGGGATGACTGTGGCAAACAAAAGGAGATTCGAACATTCTAGAGGGGCATCCACAAGTCTCGGTGCAGTTATGATGGTGTGGGATGGGAGTGCATAGAAATTCTCAGGACCTTCAGACATCTGTATCTCCTGTGGCCAAGGCCACTGTCAGAGGAAATAATCTAAATGTTTGTGGATTCCTGTGTCTCCCTGGGCAGTTGACCTGCACAGACAGGAACCTCAGCAGTGACAGAAGAGAGATCCAGGGATGGGTCTTCTCTGACCCAGCCAGCATTCCGAGTGACTGAGGTGGATGTGGACATCATTGCTTACCAATTTTTACCAACATTGAGGCAGGGCTCACTCTCCTAAATTGTAGGGAGAGGAATATGGTAAAGCCAAAATAGTTGACAGATCTAACTTTCCTAGTGGAACAGTATATATAGATTTTAATGAGGAACATTTATTTAATAGCTTTATGGAGGTATGATTAACATGCAATAAACTGCAAATATGTAAAGTGTAAAATGTGCTGTTTCAGCATGTGTGTACACCTATGAAACCACCACAGTCAAGATATCCAACACAACAAAAGATTGTCCCTTTATAATCCTCAATTTTTCCTTATCTTGTTTTCCACAATTCACAAGCAACAGCAAGCATTTTCTATAATTTTATAAATGAAACCATATGGTGTGTACTTTTTAGGGGGTGGGGCTCTGGCTTTTTCAGTAAACATAACTATTTTAAGGTTAATCCATTATCTTGTTGCATGAATCAATTGTTTGCTCATTTGTATTGCTGCGTAGTATTTCAGTATTTCATTGTATACCACAATTTTTCTTCTTTGTCAACTTAATTGTTATGGATGTTTGGGTAACTTTCAGTTTTTGGCTATTACAAATAAACCTCTGAAGATTTGTGTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131845-ZNF304:NM_020657:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.027
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.3),PF0009621=zf-C2H2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=3.5)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)