BtaINT0166119 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002370 | ZNF792
Description
zinc finger protein 792 [Source:HGNC Symbol;Acc:HGNC:24751]
Coordinates
chr18:45888124-45890931:-
Coord C1 exon
chr18:45890809-45890931
Coord A exon
chr18:45888288-45890808
Coord C2 exon
chr18:45888124-45888287
Length
2521 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CAGCATTTCTCTACTTTCAGATT
3' ss Score
8.09
Exon sequences
Seq C1 exon
GACTTGCATCTTTCAGGTCTCACATAGTTGCCCAGCTGGAGATGGGGGCAGAGCCCTGGGTGCCTGACCAAGCGGACATGACTTCAGCCATGGCAAGAGGGGTGTATAGAGGGCTTGGCTCAG
Seq A exon
GTAAGTGTGCGTGGGGGAGCATGTGACATCACTACTGTCTTCAAATCATACCTGACACTTTTCTTGTGTTCATCATTCTTTTGGTGCCAAGCCAATGGGCTTATATCTTTTCTACCTTGCCTTTCCTATTTTTGGTATGTTGACCACTGGTCATTTCTTCTCTGATTGGGGCCTTTTCCAGTCAGGGGCCCTTTTCCAGTCCTGTGGCCACTGCTGAGTTTTCCAAATTTGTTGGCATACTGAGTGTAGCACTTTCACAGCATCATCTTTCAGGGTTTGAAATAGCTCAACTGGACTTCCGTCACCTCCACTAGCTTTGTTTGTAGTGATGCTTTCTAAGGCCCACTTGACTTCACATTCCAGGATGTCTGGCTCTAGGTGAGTGATCACACCATCGTGATCATCTGGGTCATGAAGATCTTTTTTGTACAGTTCTTCTGTGTATTCTTGCCACCTCTTCTTAATATCTTCTGCTTCTGTTAGGTTTCTACTATTTCTGTCCTTTATCGAGCCAATCTTTGCATGAAATGTTCCCTTGGTATCTCTAATATTCTTGAAGAGATCTCTAGTCTTTCCCATTCTGTTGTTTTCCTCTATTTCTTTGCATTGATAGCTGAGGAAGGCTTTCTTATCTCTTCTTGCTATTCTTTGGAACTCTGCATTCAGATGCTGATATCTTTCCTTTTTTCCTTTGCTTTTCACTTCTCTTCTTTTCACAGCTATTTGCTAGGCCTCCCCAGACAGCCATTTTGCTTTTTTACATTTCTTTTCCATGGAGATGGTCTTGATCCCTGTCTCCTGTACAATGTCACAAACCTCCATCCATAGTTCTTCAGGCACTCTATCTATCAGATCTAGTCCCTTAAATCTATTTCTCACTTCCACTGTATAATCATAAGGGATTTCATTTAGGTCATACCTGAATGGTCTAGTGGTTTTCCCTACTTTCTTTAATTTCAGTCTGAATTTGGCAATAAGGAGCTCATGATCTGAGCCACTGTCAGCTCCTGGTCTTGTTTTTGTTGACTTCTCCATCTTTGGCTGCAAAGAATATAATCAGTCTGATTTTGGTGTTGACCATCTGGTGATGTCCATGTGTAGAGTCTTCTCTTGTGTTGTTGGAAGAGGGTGTTTGCTATGACCAGTGCGTTCTCTGGGCAAAACTCTATTAGCCTTTGCCCTGCTTCATTCCGTATTCCAAGGCCAAATCTGCCTGTTACTCCAGGTGTTTCTTGACTTCCTACTTTTGCATTCCAGGCCCCTATAATGAAAAGGACACCTTTTTTGGGTGTTAGTTCTAAAAGGTCTTGTAGATCTTCATAGAACCGTTCAACTTCAGCTTCTTCAGCATTCCTGGTTGGGACATAGACTTGGATTACTGTGATATTGAAAGGTTTGCCTTGGAAACGAACAGAGATCATTCTGTCATTTTTGAAATTGCATCCAAGTACTGCATTTCGGACTCTTTTGTTGACTATGATGGCCACTCCATTTCTTCTGAGGGATTCCTGCCCACAGTAGTAGATATAATGGTCATCTGAGTTAAAGTCACCCATTCCAGTCCATTTTAATTTGCTGATGCCTAGAATGTCGACATTCACTCTTGCCATCTCCTGTTTGACCACTTCCAATTTGCCTTGATTCATGGACCTGACATTCCAGGTTCCTATGCGATATTGCTCTTTACAGCATCAGACCTTGCTTCTATCAGCAGTCCCATCCACAACTGGGTATTGTTTTTGCTTTGGCTCCATCCCTTCATTCTTTCTGGAGTTATTTCTCCACTGATCTGCAGTATCATATTGGGCACCTACCGACCTGGGGAGTTCCTCTTTCAGTATCCTATCATTTTGCCTTTTCATACTGTTCATGGGGTTCTCAAGGCCAGAATACTGAAGTGCTTTGCCATTCCCTTTCTCCAGTGGACCATATTCTGTCAGACCTCTCTACCATGCCCCACCCATCTTGGCTGGCCCCACAGGGCGTGGCTTAGTTTCATTGCGTTAGACAAGGCTGTTGTCCTAGTGTGATTAGATTGACTAGTTTTCTGTGATTATGGTTTCAGTGTGTCTGCCCTCTGATGCCCTCTTGCAACACCTACAGTCTTACTTGGGTTTCTTTTACCTTGGACGTGGGGTATCTCTTCACGGCTGCTCCAGCAATGCGCAGCTGCTGCTCCTTACCTTGGATGAGGGATATCTTCTCACTGCCACCCCTCCTGACCTTGAACATGGAGTAGCTCCTCTAGGCACTCTTGCACCCGCACAGCCACTGCTGCATGGATGTGGGATTGCTGTTCTCGGCAGCCGTCCCTGACCTCCGGCTTCTGGTATGGCCTCCCTTATTTCATGAGCTTACCGGCCCAGGACTGCTGGGAAGACCATTCCTTATTTTGACCTTAGGCCTCTCATCTTGCCAACAGTCCCATGGACTCATTCCTGGGTCAGACTTGCATTTGTGATTGGATTGTTTCCTTCCATGAAAATTAACATGAATATCACCAGCATTTCTCTACTTTCAG
Seq C2 exon
ATTTTTACTGTGGAACAGAGAGTGAGGAATCACCTGCTGAGCTCAGTGTTTCTGTAGAAGTGTCACAGAACATGAACTCCAAGGCAGTTTCATCCACCCAGAAGGGCTACCCCTGTAACCTGTGTGGCCTCCACTTGAAAGACATTCTATATCTGGCTAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002370:ENSBTAT00000017105:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.073
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development