HsaINT0188422 @ hg38
Intron Retention
Gene
ENSG00000180884 | ZNF792
Description
zinc finger protein 792 [Source:HGNC Symbol;Acc:HGNC:24751]
Coordinates
chr19:34956354-34960357:-
Coord C1 exon
chr19:34960235-34960357
Coord A exon
chr19:34959572-34960234
Coord C2 exon
chr19:34956354-34959571
Length
663 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
CAGCATTTCTCTGCTTTCAGATT
3' ss Score
8.32
Exon sequences
Seq C1 exon
GACTTATATCTTTCAGGTCCCACATCGTTTCCCAGTTGGAGATGGGGAAAGAGCCCTGGGTGCCTGACAGTGTGGATATGACATCAGCCATGGCCAGAGGGGCTTATGGCAGGCCTGGCTCTG
Seq A exon
GTAAGCAGCGATGGGAGCTAGGGGAGGATGTGACTTCACCACTGTGTTTACATCATACCAGCATCTTCTCTCCTATTCATCATCATTTGATACCAATGCCAGTAGCCAGACCACGTCTCTGCTTTTCCTTCCCCGTGCTTGACACATTATCTACTTGTCATTATTATTCTGAGTTGGGCCCCTTGGCTGTGCCCCACTTTTCTGGCCTCCGTTTCTCTCTTTCAGCTTCCTCTGCGGCACTTTCCAACACTGGCCTACACTTAATGTGTTGTGAGATACGTGCTTTTCCTTGATGTGCTTGAACACCAGCTACTCAGTTGCAGGTTTTGCTGGGTCTAGATGCTCTCACTGCATAGCCCTCACAGGTTACCAGCAGCCCAGGCCCTGCCAAAAGGCCTTTAAAGAGAAGTGAGTGGGAGACCCTGCCTCTCTGCCCAATACTGTCCCCCATCCTTGTGTCCCTGGTCCTGATAAGGCCTCCTGTATTTTGTGACCTGGCCAGGCACAGTATGGCGGAGCAGATTATTCCTTACCCTGACCTGAGCCTTCTTGTGTTGCCAACAATCCCATGGGCTTATTCTTGGGTCAGCCAAGCATAGGTGATGGGGCTCTTTCCTTCTATTAAAGTTTATACGAACTTCACCAGCATTTCTCTGCTTTCAG
Seq C2 exon
ATTTTTGCCATGGAACAGAGGGCAAGGACTTACCTTCTGAGCATAACGTTTCTGTAGAAGGAGTGGCACAGGACAGGAGTCCCGAGGCAACTCTGTGCCCCCAGAAGACCTGCCCCTGTGACATATGTGGCCTACGTTTGAAAGACATTTTGCATTTGGCTGAACACCAGACAACACATCCCAGGCAGAAACCATTTGTGTGTGAGGCATATGTGAAAGGCTCTGAGTTCAGTGCAAACCTTCCCCGGAAACAGGTGCAGCAGAACGTACACAACCCTATCAGAACGGAGGAGGGCCAGGCTTCCCCTGTAAAGACCTGCAGAGACCACACATCAGATCAGCTTTCCACCTGCAGGGAGGGTGGGAAGGACTTTGTGGCCACAGCAGGGTTTCTGCAGTGTGAGGTCACTCCCAGCGATGGGGAGCCGCACGAGGCCACCGAAGGTGTGGTGGATTTTCACATTGCACTAAGGCATAACAAGTGCTGTGAATCTGGGGATGCCTTCAATAACAAATCCACTCTTGTTCAGCACCAGAGAATCCACAGCAGAGAAAGGCCTTATGAATGCAGCAAATGTGGAATCTTCTTCACTTACGCCGCTGACCTCACTCAACACCAGAAAGTTCACAATAGAGGAAAACCGTATGAGTGCTGTGAATGTGGAAAATTCTTCAGCCAGCACTCCAGCCTTGTTAAACATCGCAGGGTTCACACCGGTGAAAGCCCTCACGTGTGTGGTGACTGTGGGAAATTCTTCAGCCGAAGCTCCAACCTCATTCAGCATAAGAGGGTTCACACTGGTGAAAAGCCATATGAGTGCAGCGACTGTGGGAAGTTCTTCAGCCAGCGTTCCAACCTCATTCATCATAAGAGGGTTCATACGGGCAGAAGTGCCCATGAGTGCAGTGAATGTGGGAAATCTTTCAACTGCAACTCCAGCCTAATTAAACATTGGAGAGTTCACACTGGAGAAAGACCTTACAAGTGTAACGAATGTGGGAAATTCTTCAGCCACATTGCCAGCCTCATTCAACATCAGATAGTTCACACTGGCGAGCGGCCTCACGGGTGTGGTGAGTGTGGGAAAGCCTTCAGCCGAAGCTCTGACCTCATGAAACATCAGCGAGTTCACACTGGTGAGCGGCCTTATGAATGCAATGAATGTGGGAAGTTATTTAGCCAGAGCTCCAGCCTCAATAGCCATCGGAGACTTCACACTGGTGAACGGCCTTACCAGTGCAGTGAATGTGGGAAATTCTTTAACCAAAGCTCCAGCCTCAATAACCACCGGAGACTTCACACCGGCGAGCGGCCTTATGAGTGCAGCGAATGTGGGAAAACCTTCAGGCAGAGGTCCAATCTGAGGCAGCACCTGAAAGTTCACAAACCAGACAGGCCTTACGAATGCAGCGAATGTGGGAAAGCCTTCAACCAAAGGCCTACCCTCATTCGGCATCAGAAGATTCACATCAGAGAAAGGAGCATGGAGAATGTGCTCCTTCCCTGTTCACAGCACACACCAGAGATAAGCTCTGAGAACAGACCTTATCAGGGCGCTGTCAACTACAAGTTGAAACTTGTTCATCCAAGTACCCACCCTGGGGAGGTTCCCTAGGAATGCTAGCTGTGTTGGAAGCTTTCTGGAGACAAGTTACATTCTCTTACTGTAGAGTTTATCAGCGTTTTTTCACTGCTGGGGTTGTGATAGAAGCCATGTCAGCACCACACACTGCAGCTCTCCAAAGAGTGTGTCCACCACTCCACTGTGCTCAGGGAAGGCAGACCTCTCCTCTCTCTTTCCAATCCCTAAAGGGAATTAGGAGTAGTCTGAAGCCTTGGGAAGATGTCATTCCCGCCCTGTATGGCTGGTTTAGCCATGGACATGACCAGCTTTTGGCTGTGAAGACCTGAGCAGGGTTTTGCCAACAGCTTGTTCTAGAGAAGGTTTCCCTTTTTCTGGGACATTGTTGGTCTCATGTTATGCCTGTGAAGGATTTGTCCAGCCTTCATGTTACTCTACACAACAACTTATCTCCTGTGTATTGCCCTGGTTCATGTGATGATAATGGCCTTATGATAAAGCCGCCTTTAGTCTTCCATGTTCTGATCACTGTGTGGGGTGGTTCAAGAGCAGAGTTAAGATCTACCAAACTGAAGGGGTCTCCAGATTATCTTGGAGGGGACAGGAGGATGGCAGAGAAACAACTGTCAATCCAGATTTGACCTCATTTGCATTGCCACCAAGGCCTCCTAGGAAAAATTGTAGGAATTTATGGGTATAATATTGTGGTCTGAATGGCGTGAATTTTTATCCCGAGGAGGGGGCAGTTGTGACAACCTCCAGTGCATGTGGGAACAGCATGAATTGGGTCCCTTATTCCCAGGGGGTGCCCCATATTCCCCAATACTGTAAAGCAGATGCTGTTTAGCACCTGCCAAGGAGCCATATGCCCTGAAGTTCAGCATTAGGCAGGTATCTCTTAACTGTAAGACATACCAGGCCCAGCTGGGACCATAATTTGTACAGAAACACTGGATGTGATTAATAGGGAGTAGGCGAGATTATAGCAAACCAGCAGAAATGGAACTCTGCTAAATGTGCATCCGTGAATGCTCCCTTGAATGTGGCTGTGCAGGATTCAGGGTTTGCAGAAATTCTCAGGACCTCAGACCTCTGTCCTATGACTAATGTTACTGGCAGAGCAAATAATCTAAAGGTTTTGGTTTTGTGGATTACCATCTCCGTGCTGTGCATCTGAAGGCCAGTGCTGTGCTGGCAGGAAAATAGGGACTGAGAAAAAGCAGATCCTATACTATAGGGACTGTAGTATCTATGACGTAGCCAGCCATTCTTTGCTCCCAAGGCAAGAAGAAAGAGATGACAGAGTCAATATAGGGTTGCCAAATCGGATTTTCTAAAATGAGTAGGAAGTTGGATTTTTATGTGCAACAGTTTCTTTTAATGCTTTGTTGATATGTGATTGTCATGCAATAATTATTCATATTTGGTAAGTTTTGTACATATATTATGTACACTCAGGGAACCAATACCATAATCATGATAATGAACGTATCCATCACCTGCAAAGCTACCTCATGCCCCTTTACATTCCCTCCTTGCCTTCCCTAGGAAACCGTTGATTTACATTTTTTACTTTAGATTTGTTTGCCTTTTCTAGAATTAACACAATTGGAATCATAAAGTATTTATACTCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180884:ENST00000404801:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=NA C2=0.226
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTTCCCAGTTGGAGATGGG
R:
GGGGAAGGTTTGCACTGAACT
Band lengths:
344-1007
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains