GgaINT0002165 @ galGal3
Intron Retention
Description
NA
Coordinates
chrUn_random:53086512-53086757:+
Coord C1 exon
chrUn_random:53086512-53086622
Coord A exon
chrUn_random:53086623-53086734
Coord C2 exon
chrUn_random:53086735-53086757
Length
112 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTTCCTCTTTCCTCCAGCAGGAA
3' ss Score
10.24
Exon sequences
Seq C1 exon
CTCCACTTCCAGCCCCCAAACCCGGGCTGATCTCCCTGCTAGAAGGAGGGGAAGACCCCTGGATCCCAGGTGTGCGTAGCCCGGAGGCCGTGCCAGGAGACCTGAGCCCAG
Seq A exon
GTGAGTTGCTGGAGGGAGGGAAGGAGGAGGCTGGGGCTGGAAGAGTCCTCTCTGTCTGTGTTTTATTTTGGGCACCGTGTGCAATTTCTGGATTTCCTCTTTCCTCCAGCAG
Seq C2 exon
GAACTGGGATTACAGATATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022064:ENSGALT00000022175:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.316 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]