MmuINT0179739 @ mm10
Intron Retention
Gene
ENSMUSG00000033669 | Zfp7
Description
zinc finger protein 7 [Source:MGI Symbol;Acc:MGI:99208]
Coordinates
chr15:76888231-76892392:+
Coord C1 exon
chr15:76888231-76888347
Coord A exon
chr15:76888348-76890006
Coord C2 exon
chr15:76890007-76892392
Length
1659 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTACTTTGTGTTTATTTCAGACT
3' ss Score
9.72
Exon sequences
Seq C1 exon
CAGGATTCCTGGTCTTTAAGCCGGAATTGATCTCCCGGCTGGAGCAAGGACAAGAGCCGTGGGTCCTTGATCTACAGGGAGCAGAGGGGACAGAGGCACCAAGGATTTGCCAGACAG
Seq A exon
GTGAGGCGCAGGCCTTGTCACGGAGATGGTCTGAATAAGAAGGAGCTGAGGTGAGATCTTTGAGACAGTGGGAGGCGGGGGTGAGCCCTGGTCACCAGGCTGGGTGTCTGAGGGACATTGCAGAGGAGGCCAGCCCTAGAAAGAACCACAGACAGGTGTGTGGCCACCTCTGGGAAGGCTGTCCAACAAAAAGACAAGGACACAAAACACTGGTCCATTTGGCAGCTATGCGTCATGTACTTAATGGTCATAGAGAAATCTGGCCTGTGGGATTGGGACAGCCAGGTAGCCTGTGTGGATTTGAAGAGTTTAGAAGGGAAGTAGATGTCATGAAGGCCTCTTGAGGGTTCTGGGCACTAAGACCCTTGCATGAACTTGCCCCAGGGAAGAAGTCAATGTGAACTATTGGGTATAGCCACTCTAACCTTATTGTGGCACATGGTAAAACATTCTGAGTGGGCTGGAGAGATGGCTCAGCGGGTAAGCGCACTGACTGCTCTTTCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCACCCATAATGAGATCTAATGCCCTCTTCTGGTGCGTCTGATGTCAGCTATACTGAACTTAACGTATAATAATAATAAATAAATCTTTAAAAAAAAAAATCCTGGCCAGGCGGTGGTGGCGCACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAACAAAACAAAAATTCTGAATAAAAACCACTTAGGAAGGAAAGAGTTTATTTCTGTTCACATTTCTAGGTAGTAAGCTGTCGATGTGGGAAGTCAGCGTGGAAGATGGCGCACAAACAGTGGAGGAACACTGTCACTCTGTCATTCTGTTACTCTGTTACTGGCTAGCTGGGGTTGAGCTTGCTTGCTTATACAGCCCAGACGCAGGTGCCCAGTAGTGACGCTGCCCATTTCCATAATCAGTCGTCAATCAAGACAGTCTCACAAACTGATCTGGAGTTGCTGAGGTTTCCCTCGATGGTGCCAGTCTGTCAGTAAAAACTAACCGTCACACCTATAGCAGCAAGGTTTGCCTGGCATGGGTTTGCGGTTTGGGTCCGTCTCCAAGAAGCCTGCCTTGGAGGACAGCCACGGACAGGTTGAGCACCCTCTTCTGCTCTGGGCCATCCTGCTAAGACATACCACCTCTTTCTTCTTCAGCCTCGATCTCATTCCTGTATTTTGGTCACACCCCCTTTTGTCCTTACTTGTCTGATAGCATGCTTGGGAGGTGGGGTGTCCTCTGACGAATTCTAGACTGACATTCTGTCCTCTGGCTTGCTCTGTCCTGCCTCATTTTGCACACTGTAGAGTATTCCTCGGTGCCCGATAGGGTGGGCCCTTTTAGGACTTGGAGCGCTCAGCACTCTGTCCTGTAGGCATAAGCATATCAACGCTGTCCAGTGAACTAAATTGTGAGGATTTCCCTTTGTATCTCCTTGCTATACTTTGCACTTGGGCTGTTCCCCACATCCCTGGCCAGCTCTGCCCTTTTGCAGACCTCAGATGTAAGGAACATTTTTTTTTTTTACTTTGTGTTTATTTCAG
Seq C2 exon
ACTCCGCTATTAGAACTGATCGCAAGCAGACCTGTGAGTACACGAGCCTCCTCCAAAGGCAGATTCCTGGCTTTGGAGACAATTTGGATTCTAAGGTCTGGTCAGAGAATTGCCCAAGAAGCCTTGGGCTAAGCGTGAGTGGCTCACTTTTCCAGAAGCACCGTTTGAATAGCGAGGCCGTGATGCCCAAGAACTCCACAAAGGATGCTGTCCAAGAACGTAAGGAGCTGCAGGCCACCGATGTGGGTTATCGGCCTGATGACCAGAGAGACCACCTGAGCTCAAAACTGATTCGGCGTCAAAGCGTTCCTACCGGAGAGAACCGTTACCCATGTGAAGAGTGTGGCAAAGCTTTCAGGTGGCGCTCTCGCCTGAATCAGCACAAACTGAGCCACACTGGAGAGAAATCTTATCAGTGCAATAAGTGTACAAAAGTCTTCGCTTCTAGCTCGCGACTGATTCGCCATCAGAGAGCTCACACCGGAGAAAAGCCGTTTAAATGTGACCAGTGTGGGAAGCGCTTCGTCCTGGCCTCGGTACTCACTCAGCATCAGAGGATCCACACCGGAGAGAGGCCATTTAAATGTGCCGAGTGCGGGAAAGGTTTCCACCTGAGCGCAAAGCTGGTTCAGCATCAAAGAATTCATACTGGAGAGAAGCCTTACCGATGTGAGGAGTGTGGGAAAACCTTTGGTCAGAGCTCAAGCCTTGTCCATCATCAGAGAATCCACACCGGAGAGAGGCCCTTCATTTGTCAAGAGTGCGGGAAAGCCTTCTGCCAGCGCTCACAGCTCAGCAGACACCGGAGGACGCACACTGGAGAGAGGCCCTACTCCTGCCAGGAGTGTGGCAAGGCCTTCTGCCAGAGAGCAACTCTAGCCCAGCATCAGAAGATGATGCATACAGCGGAGAAATCTCAAATGCCGAGAGCCTCAGAGAGCCCAAGCCTTATTGCCTGTCAGGGAAATACCACTGAAGAGAAGCCATTTAAGTGTGAGCAGTGTGGCAAAGCTTTCAGGTGGCTCTCTCGCCTGAATCAGCACCAGGTGGTCCATTCTGGAGAGAAACCTTACCAGTGCAACAAGTGCTCGAAAGCCTTTGGCTGTACCTCACGACTGATTCGCCACCAGAGAACTCACACCGGAGAAAAGCCCTTTAAATGTGACGAATGTGGCAAGCGCTTCGTCCAGAGCTCACACCTTATTCAGCATCAGCGAATCCACACGGGAGAGAAGCCTTACGTGTGTGATGACTGTGGGAGAGCTTTTACCCAGAGCTCCAGCCTCATTTACCACCAGAGGATCCATAAGGGAGAGAAGCCATATAAATGCAGCCAGTGTGGCAAAGCCTTCAGCATGAGCACACAGCTCACCAGCCATCAGAGGACTCACACCGGGGAGAGACCTTATACGTGTAACGAGTGTGGGAAGACCTTCCGTCAAAACTCAACCCTTTTCCAACACCAGATAATTCATGTTAGAGTAAAGCCCTATGAGTGTAATGAGTGTGGAAAGGCCTTCAGCCGGAGCTCATACCTTATTGAACACCAGAGAATACACACTAGAGCCCAGGGGGGCCATGAATTTGGGGACACCCCTGAAAGTCCCACCGTTTTGAACCATAAAAAAGTGCACACTGTAAAAAAGTTGTACCAGTGTGACGACTGCGATAAGGTCTTCAGGTGGCGTTCGTACCTGATTATCCACCAGCGGATTCACACAGGAGAGAGGCCTTATAAATGTAATGCCTGTGGCAAGGCTTTTCATCAGATCGCAAAGCTCACTCAGCACCAAAAACTTCACATGAGATAAATCATTTCCCTAAATGTCTTGGTTACTTCTCTCTTGGCTGTGATGGCACCATGAGTGACCAAGGCAGCTTAGACAAGAGTTCTCGTGGGGCTTACAGTGGAGCGTTAGTTTCAGAGATTGTTCACGGCAGTCTTGGCAGGGAGCAGGGCGGCAGGAAGGCCTGATGTTAGAGCAGTCGCTTAGAGCTCACATCGTGAGACAGCCAGTTACTAGGCAGAGAGATCTAACTGGAAATGGTGAGAGGTTTTAAAAAACCTCAAAGCTGGCCTCCCAGTTACCTCCTCTAAAGAGGGCATACCTCCTAATAATTGCCAAACAGTTCCACCAACTGAGGACCACATGTTGGAACATATGAGCCCCTGGAATTTGTTCTCATCCAAACCACCACACTAAAAGTAATGTAACTATGAATAAGCCAGAAGCCTTATTTAATTTGGGTAATTTATGCTATCAGAGACTTGAGGATGCTAGGAAGATTCAGATTTGTTCTTAAAGAATAGTCTACTTAGGAAATGTTTTATTCGTTTCTGTAATATTTTACCATTTACCCATTAAATAAAAGTGTGTGTCACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033669:ENSMUST00000023179:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.113 A=NA C2=0.166
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.3),PF0009621=zf-C2H2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTACAGGGAGCAGAGGGG
R:
ACGCCGAATCAGTTTTGAGCT
Band lengths:
348-2007
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types