HsaINT0188160 @ hg38
Intron Retention
Gene
ENSG00000147789 | ZNF7
Description
zinc finger protein 7 [Source:HGNC Symbol;Acc:HGNC:13139]
Coordinates
chr8:144837391-144843772:+
Coord C1 exon
chr8:144837391-144837507
Coord A exon
chr8:144837508-144841354
Coord C2 exon
chr8:144841355-144843772
Length
3847 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTTGTTCCTGTTTATTTCAGATT
3' ss Score
10.9
Exon sequences
Seq C1 exon
CAGGATTCCTGGTTTTCAAGCCTGAGCTGATCTCTCGGCTGGAGCAGGGAGAAGAGCCATGGGTCCTCGACCTGCAGGGAGCAGAGGGGACAGAGGCACCAAGGACCTCCAAGACAG
Seq A exon
GTGAGGCTTAGATCCCATCGCAGAGAAGCCCTGGGGTGAGGAGAAACTGCAGGAGGGGCCTCACAACTGTGGGTAGCTGTGGGTGAGTCGCGGGGGCTACACTGGGATGCCTGGGAATGCTACTGGGGAAGCAGCATCCAGCACCTAGAAGGGAGCATAGACCCGTTGTGGGGCTGCCTTGGGAGAGGCCAAACTGCAGAAGAGCCAAGACACAAAAACCCATGCATTTCCACAAAAACGGAGCTTGTTTTTGAATCATGTCACATTTTGTTCTATTTTTAATTTTACTCATACTTTCGTTAAGCAAAGATACAAACCTATGGATCCAAGTGAAGGGTTAGGTTTGGCATTCAGTAACCTCTCCTCGGGTAAGCATATTCCCTGAGGCAGCTCCCTTCAGACCCTCTCAGGCTCCAGGAGTGCATTACTTTCCTGTGGCTGCCATAACAATGAACCACAGACTAGGAAGCTTAAAACAACAGAAATTTATTGTCTCACAGCTGTGGAGGCCGGAAATCTGAAACCGGGGGGTCAGCAAGCAGGGCCGTGCCCCCCTGTGAAGGCTTTAGGGAAGGATCCTGTCCTGCCTCTCCGGGCAGCTGGTGGTTTTCTGGCAGTCCTTGGGTTCCTTGGCTTGTGGATGCGTCCCTCACTCTGATCTCCGACTCCTTCACACGGCTGCCTTCTCCCTGCGTGTCTGTGTTCATGTGGCCATCTCCTTAGAAGGACACCAGTCATGGTGGGTTAGGGGCCACCCCAGTGACCTCATGGTGACTAATTAATCTGCAACGACTGTGTTTCCAAACAAGGTCACATTCTGAGGTGCTTCAAGTTAGGACTTCAGCCTATCTTGGGGTCCTCAGCCCTAACCAGGGCACCCACTGCCTCCGGCATCAGCTCCTGCTGGGCAGGCGCCCGGCCTGGTGCTCTGCTCCCCTGCTTAGCCGGTGTGCTGCCCAGCATGACAAGGGAGATGGGTCTGCGTGCATCTCAGCTGCAGAAAGGAAGCCCCTCACCTCCCTTTCAGTTGCTGCTGGGTCATCACCGTCACTCCTGCAGCAGGGCAGGACCAGGTCCTACAGAGGCCACCGGCTTGTAGGGGCCTCGGGAAGCAAGTTGGACAGTCCAAAGTTGTGAAAAGTAGGGGCCGTGGAGCCGGGCATGGTGGCTCACGCCGGCCATTCTAGCGATTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCCAACACGGTGAAACCCTGTGTCTACTAAAAATACAAAAAATTAACCAGGCGTGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCCGAGGCAGGAGAATGGTGTGAGCCCAGGAGGCAGAGCTTGCAGTGAGCCGAGATTGCGCTACTGCACTCCAGCCTGGGCGACAGAGCGAGATGACGTCTCAAAAAAAAAAAAAAAAAAAAAGCAGGGGCTGTGATCTTACTTCCATTCATATGCGCCTAGGGGCTGTGACCTTACTTCCATTCATATGCGCCTAGGGGCTGTGACCTTACTTCCATTCATATGCGCCTAGGGGCTGTGACCTTACTTCCATTCATATGCGCCTAGGGGCTGTGACCTTACTTCCATTCATATGCGCCTAGGGGCTGTGACCTTACTTCCATTCATATGCGCCTAGGGGCTGTGACCTTACTTCCATTCATATGCGCCTAGGGGCTGTGACCTTACTTCCATTCATATGCCCCTAGGCAGCTTCAAAGGACAAGGAGGGTTTCTGAGCCTCTTCACGCCCTGTGGGCCTTGCAGCCGCCCAGGAAGTCTGCATGTGATGTGTGGGAAGAGTGGTCAGGAACCCTGGCCTCACTGGCTCTGCTGGCTACTCCCATGTGATCCTTTCTGCTCAGTCTCCCTGAGAAGGAGGTTCAGCTATAAGGTGGCCCAGTTAAAACCCAGCCGCCCATTAAAATGTCTCCAACATGGACAGGAGCGTTTAAAGAGGGTGCCATGGCAGAAAAGCCAGCTACAGTTGGCAGAAATAGTTCAGTGGGTTTATATGTAGCAGGTGGTCCTCACTGTGATAAAGCAACAACAAAAAAATAGAATCCCACAGTAGGTGAGAGCTGCTGTTGATGGACCCAGCACTTGCTCGCAGACCTGAGAGTCCGGGGCAGGGATGTAGCCTCTTAGATAAAACATGCAGCAGCACAAAACCAGAATACATGAAGCAAGGCAGAAATGCCCAGATATGTTACTTGTCCCCAGCTGGTACAGTCAGCATCAGATACTGAAAGATATTGGCCCAGAGCAGTGGAGGAGCGGCCAGGTCCCAGCTGTGCACCCCCACGCTTTTGACCACCACCGTGCCCCCTGCTGGGTGGTTCCTGGCATCCCCCAACAAAGCCTTGCTGTCAGCTTGGCCCTGCTCTCTCTGCCGCTGCTCTTTATTTTTTTATTTTTTGAGATGGAGTCTTTGTTGCCCAGGCTGGAGTGCAGTGGCATGATCTTGGCTCACTGCAACCTCTGCCTGCCAGGTTCAAGTGATTCTTGTGCCTCAGCCTCCCAAGTAGCCGGGATTACAGGCGTGAGCCACTGCACCTGGCCACCCTGCTCTCTTATCTTCACAGCAGGGGAAGGCTTGGGAGGAGTGTCAAGCAAGCCCTGTTGAAAGAGCAGGCATGCTGAGGTGGTGTGGTTGTGCAGGGAAAGCAGCACATGAGGACCAGGCCTGGAGATGCCTCCTGTCCTCACAGGCCTTGAGCATCCCTGCTACACAATGAGGTTGAAAGGGCTTCCTGCTCTGATTCTCCAGGACTGATAGGAAGACCTTTGGAGATCCCTGGAAGCCGGAGACTCACCACCAATGGTTAGGAGTGGGCAGGAACCGAAGCTTGAAGCCCTGTAACTGGGCTGTGCATTCATGTGGGGTAGACTCGGGCTGGTTATAGCTGTGGCTGCGTGGTTGTGGTTGTGAACGTGATTGTGTCGTGGTGGGGACCGTGGTTGTCATGATCATAGCCGTGTGTTGTGGTTGCATCCTGTCATGGTTTGATCACAGACATCAAGGAGATGTCTGACCTCAGCAGAGGTGCCCTCTAGGGTTACAGAGTAGGACAGAAGCCTGTGCTTACTTGGAGAGTCCAGAAGGAACGCAGATGTCTGGAAGGCCTCCTGGGGGCCTCCAGAAACTTGCAGCCCCAGGGAAGAAGTCAGTGTGGTCTTAGAGGTGGCCACGCACAGCCCAGGGAGAAGCAGGGGAGGTGGCCAGGTGCAAGTTGGCAGCAGCAGCCAGGAGGCAGCTGAGGGGGCTGGGTCCTGCTCAGAGAAGCCCACCCCAGGGAGTAGCCATGAACGGCCTAGGTGCCCAGTGCTCTTCTGAGCTCACGTAGTAAGTCCCTTGGCAGCTCTTCCAGCCTTGTTTCCTCATCACAATCCATGCTCTCCATTCAGAACTCAGACCCTGTACTGTTTCCTCGCCAGCTCGGATGCTGGAGCCCCTGACCCCGCAGCCCAATCCGTGGTAGCTTCCCACCCTTCTGGTCTTGCTTTGTCTCCTTTGCCTCTGCATGGACTGTGCCCCACACCAGTGCCTGTAGGATGGACCTCTCTGCTCACAGAACCCAGCCCTGCCCCAGCAATGAACATTCATTGCTATCGAATGAGTGAACAAGGTAAAAAGTATGAAACCACTTTTGAGAACTGTCAAAGGCTCTGCCTTCTCTTGCACGTTTCCACCTGGGGCCTCACAGTGCTCAGTGCAACTATCCTGGGAGCCTTGAGCCCTGGCCCCCGCATTTGTAGTCTTATCATTTCTCTGAGCACAGGGCCTAAGGAACGTCTTTGTTCCTGTTTATTTCAG
Seq C2 exon
ATTCTACGATTAGGACTGAAAATGAGCAGGCCTGTGAGGACATGGACATCCTAAAATCAGAATCCTATGGGACAGTGGTCAGAATCTCCCCACAGGACTTTCCTCAGAATCCTGGCTTTGGAGACGTTTCTGATTCTGAGGTCTGGTTAGACAGTCATCTGGGCAGTCCCGGGCTGAAAGTGACAGGCTTTACCTTCCAAAATAACTGTTTGAATGAGGAGACTGTGGTTCCCAAGACCTTCACCAAGGACGCACCCCAGGGATGTAAGGAGCTGGGAAGCAGCGGCCTGGATTGTCAGCCTCTTGAAAGTCAGGGAGAGAGTGCGGAAGGGATGTCCCAGAGATGCGAGGAGTGTGGCAAAGGCATCAGAGCCACTTCAGATATCGCTCTGCATTGGGAAATTAATACACAGAAAATTAGCAGATGTCAAGAATGCCAAAAAAAGTTATCTGACTGCTTGCAGGGGAAACATACAAATAACTGCCATGGAGAGAAGCCGTACGAATGTGCAGAGTGTGGGAAAGTCTTCAGGCTCTGCTCGCAGCTTAATCAGCATCAGAGAATCCACACGGGAGAGAAACCCTTTAAATGCACTGAGTGTGGAAAAGCCTTCCGCCTGAGCTCAAAACTTATTCAGCATCAAAGAATCCACACTGGGGAGAAGCCCTACAGATGTGAGGAATGTGGAAAAGCTTTTGGTCAGAGCTCAAGCCTCATCCACCATCAGAGAATCCACACAGGAGAGAGGCCCTATGGTTGTCGTGAGTGTGGGAAAGCCTTCAGCCAGCAGTCGCAGCTGGTTAGACACCAGAGAACTCACACTGGGGAGAGGCCCTACCCTTGCAAGGAGTGTGGGAAGGCCTTCAGCCAGAGCTCCACCCTAGCCCAGCATCAAAGGATGCATACTGGGGAGAAAGCTCAAATTCTAAAAGCCTCAGACAGTCCAAGCCTTGTTGCACATCAGAGAATTCACGCTGTAGAGAAACCATTTAAGTGTGATGAGTGTGGGAAAGCTTTTAGGTGGATCTCTCGCCTGAGTCAGCATCAGCTGATTCACACTGGAGAGAAGCCTTATAAATGCAACAAGTGTACAAAAGCCTTTGGTTGTAGTTCACGGCTTATTCGCCATCAGAGAACTCACACTGGAGAAAAACCATTTAAATGTGATGAGTGTGGCAAAGGCTTTGTTCAGGGCTCACACCTTATTCAGCATCAGCGAATCCACACTGGAGAGAAACCCTATGTGTGTAATGACTGTGGAAAAGCCTTCAGTCAGAGTTCCAGCCTTATTTACCATCAGAGAATCCATAAAGGAGAGAAGCCCTACGAATGCCTCCAATGCGGAAAAGCCTTCAGTATGAGCACACAGCTTACAATACATCAAAGGGTTCACACTGGAGAGAGGCCCTATAAATGTAATGAATGTGGGAAAGCCTTCAGTCAAAACTCAACCCTTTTCCAACACCAGATAATTCATGCAGGGGTGAAGCCCTATGAGTGCAGTGAGTGTGGAAAAGCCTTCAGCCGGAGCTCATATCTTATTGAACACCAGAGAATACACACTAGGGCCCAGTGGTTTTACGAATATGGGAATGCCCTGGAAGGGTCCACCTTTGTGAGCCGTAAAAAGGTTAATACTATAAAGAAACTGCATCAGTGTGAAGACTGTGAGAAGATATTTAGGTGGCGTTCACACCTAATTATACACCAGAGAATTCACACCGGGGAGAAGCCTTATAAATGCAATGACTGTGGCAAAGCTTTTAATCGTAGCTCAAGGCTTACCCAGCATCAAAAAATTCACATGGGATAGACCACTTACATATAAATGTGTATATATGTGAATAAACCTATAGCCTTAACTTACTTATTTTATATGGAATCGTTTATACTGACAAACATGTAGAATGTTGGTAAAGGTTCAGAATTGCTCTCAAGAATATCCAACTTCAGGCCGAGTGTGGTGGCTTATGCCTGTCATCCCAGCACTTTGGGAGGCCAAGGCGGGCACATCACGAGGTCAGGAGGTTGAGACCATCCTGGGTAACAGGTGAAACCCCATCTCTACTAAAAATACAAAAATTTAGCTGGGCGTGGTGGCAGGCACCTGTGGTCCCAGCTGCTCGGGAGGCTGAGGCAGGAGAATGGCATCAGCCCAGGAGGCGGAGCTTGCAGTGAGCTGAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCCTCTCAAAAAAAAAAAAAAAAAAAAAAATCCAACTTCATACAAAATGTATGTTTATTTCCTGAAATGTTTGACCTTAACCTGTTCAATAAAGCCTGTGTCCCTCAAAATCAGGGTGCAGTCTGCAGTTTTGAGTTGACAGGTCCCTGTGAATGAGGAAGCAGCACAAGGAGGGCTCTACGAGCGCTGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147789:ENST00000528372:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.452 A=NA C2=0.141
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.3),PF0009621=zf-C2H2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains