HsaINT0186589 @ hg38
Intron Retention
Gene
ENSG00000196150 | ZNF250
Description
zinc finger protein 250 [Source:HGNC Symbol;Acc:HGNC:13044]
Coordinates
chr8:144886840-144889694:-
Coord C1 exon
chr8:144889581-144889694
Coord A exon
chr8:144886903-144889580
Coord C2 exon
chr8:144886840-144886902
Length
2678 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ACTCGCTGTTTTTTTTCCAGACA
3' ss Score
9.95
Exon sequences
Seq C1 exon
GACTTCCAGGATCCAAGCCTGACATAATCTCCCAGCTGGAGCGAGGGGAAGATCCCTGGGTCCTGGACAGGAAGGGGGCTAAGAAGAGCCAGGGCCTGTGGAGTGACTACTCAG
Seq A exon
GTGAGTGAGGAGAGCTGGCCCCTCCCTCACTGAGGGCTAAACAGGTCCTGAGCAAAGCTGTGGACCTAGTTCATACTGTGCCGCTCACTGGAGTGGCTTCCACCTGGAGTAAAACCTTATCTGGCCTTATCTGGCAAAGGAGTCTATAGACTGGGGGTTGCTGAATCAGGTGGCAGCCCATGGCTGGAAGTGAGCATAGCAGTGAATTTCAACAAGCTGATGTGCAGAGCCATGTAGAGGAAGTTAGGGCATGGCTGCAGTGATTCTGTCCCTGACCAGAGGGACTGGTTAGCCAGATTTGGTCCTAATAGGACATTCAGGTTTTGAGAGTTACCTGATGATTTAGAAAATAACAAAGCATCCTAAATGTGGAAAGGAAGTGTCTCAACCTGACACTTAAGGTGAAGTGCTGAAAGCACACTGTTTCATCTCAGAACAAGACAAAGAAGCCCGCCATCCCCATGTCCATATAATGTTGTACTGGGTATCCCATGTACAAAATAAGGCAAAACCGGCCAGGCGTGGTGGCTCAAGCCTGTAATACCAGCACTTTGGGAGACTGAGGCGGGTGGATCACGAGGTCAGGAGATCAAGACCATCCTGGCTAACACGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATGGTGGCATGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCCTGTAGTCCCAGCTACTCCCAGATTCATGGCGTGAACCCGGGAGGCAGAGGTTGCAGTGAGCTGAGATCGCTCCACTGCACTCCAGCCTGGGGGACAGAGCATGAGACTCTGTCTCAAAAAAATAAAAATAAAAATAAGGCAAAACCAAAGCTATAAGAATTAGAAAGAAAAAAGCATTGTTTGCAGTTTATGTGATTGTCAACCTGGAAAATGATTGATTAAAATTCACAAGGGAAATTACCAGTTTTGCTGGATACAATTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGTCTTGCTCTGTCGCCCAGGCTGGAATGCAGTGGCATGAGTCTCGGGTCACTGCAAGCTCCGCCGTCTGGGTTCAAGCAATTCTTACGCCTCAGCTTCTCGAATAGCTGGGATTACAGGTCCATGCCCCTATACCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGATTTCACCATGTTGGCCAGGCTAGTCTCGAACTCCTGACCTGAAGTGATCCACCTGCCTCAGCCTCCCAAAGTGCTGGTATTACAGGCATGAGCCACTGCACCTGGCCAGAAATGTTTTATTTATATTTGTCAGCAACCAGCAAAGGTGTAATATTTTAAAAGATAACATTTATAATAGCATCAGGAATATAAAGCATCCAAGAATTAATCTAACAAAAGATGTACAAGACCTTTAGATGGAGAAAATTATAAAAAGAAAGATGGTGCATAGATCCAACCCTGAAGTTCATGTTTGCGGTTGCTTAAGGCAAAGAACCTCTGACTTCAGTAAGGTGACGTCTGAGTCTTAGGAAAACCTCAGTCAGCCTGTCCTGCCATAATGTGCCCCACTTGGGGAGAGTAGGGACAGTTTGGGCAACACCTCCATTGGCTGATCAGCTTCAGCATTTCAGATGTGGTGGTTTTCCCCTTGAAAGCTCCTCCTTATTTCTAAAGTAGCTTTATGTGGATAGGGCACCAGGTATTACAGTCTACCTCTTACTGGCCTGCAAAATCAGATATCCTCAGAGGAACAAGGTACATGCCAGCCTTAGAGGAATTTAATTTTCCAGTGACTATACAAGAAGACACATCATCATGTCTTGGAAATCTTGCATAGAACTTCTGCTTACTGACTGCAGCTGTAGGAGACAAGAAAACACAGGAGGGCATTTTGCTGCCACTGCCAAACCAGTCCTGGGCTCCCTTGTGTCCAGCTATGTACTCGCCTGATGGAGAGCTTAAACTGCCTTTGAGCGCCCTTTGATTTGACACCACAGAGACTGTGAAATTCTCTGGGAGCATGGCTGGTTGGAGATGAGAAGTTTTTTCATGGAAGCACCTGGTCCCCTCACCTCTAACACAGGCCACAGAGGACGATGGGACTGAGTTTTAGATTACTGATGTGCATAGAAACAGAAGCCACCTGCCACAACCTGGATCACTGCCACTAGCATCAGAGCAAGCGAGGAGTAGATATGCCTTTGTCTTGTCCTGGCAGTTCCTCAGGATGGATAAGTGTGTGCACCTGCCCAGCCCTGACCCTGCTGTTTGTAACTCAGTAAATTACATGTTGTAATAGCAACGAAAGGATTTTCCACTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGAGACGGAGTTTCACTCTGTCCCCCAGGCTGGAGTGCAGTAGTGTGATCTCGGCTCACTGCAACTTCTTGTCTCCGGGGTTCAAGCGATTCTCCTGCCTCAGCTTCCCTAGTAGTGGGGACTACAGGCATGCACCACCATGTCCAGCTAATTTTTGTATTTTTTAGTAGAGACGGGGTTTCACTATATGTTGGCCAGGCTGGTCTCAAACTTCTGACCTCAAGTGATCCACTCACCTTGGCCTCCCAAAGTGCTGGGATTACAGACGTGAGCCACCATGCCCGGCCAGGATTTTCCACTCTTGAAGGGAGTATTTTGTTGTCACTTCAACTCGCTGTTTTTTTTCCAG
Seq C2 exon
ACAACCTCAAATATGACCACACTACAGCCTGTACACAACAAGACAGTTTATCTTGTCCATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196150:ENST00000292579:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=NA C2=0.086
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains