HsaINT0186589 @ hg19
Intron Retention
Gene
ENSG00000196150 | ZNF250
Description
zinc finger protein 250 [Source:HGNC Symbol;Acc:13044]
Coordinates
chr8:146112225-146115079:-
Coord C1 exon
chr8:146114966-146115079
Coord A exon
chr8:146112288-146114965
Coord C2 exon
chr8:146112225-146112287
Length
2678 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ACTCGCTGTTTTTTTTCCAGACA
3' ss Score
9.95
Exon sequences
Seq C1 exon
GACTTCCAGGATCCAAGCCTGACATAATCTCCCAGCTGGAGCGAGGGGAAGATCCCTGGGTCCTGGACAGGAAGGGGGCTAAGAAGAGCCAGGGCCTGTGGAGTGACTACTCAG
Seq A exon
GTGAGTGAGGAGAGCTGGCCCCTCCCTCACTGAGGGCTAAACAGGTCCTGAGCAAAGCTGTGGACCTAGTTCATACTGTGCCGCTCACTGGAGTGGCTTCCACCTGGAGTAAAACCTTATCTGGCCTTATCTGGCAAAGGAGTCTATAGACTGGGGGTTGCTGAATCAGGTGGCAGCCCATGGCTGGAAGTGAGCATAGCAGTGAATTTCAACAAGCTGATGTGCAGAGCCATGTAGAGGAAGTTAGGGCATGGCTGCAGTGATTCTGTCCCTGACCAGAGGGACTGGTTAGCCAGATTTGGTCCTAATAGGACATTCAGGTTTTGAGAGTTACCTGATGATTTAGAAAATAACAAAGCATCCTAAATGTGGAAAGGAAGTGTCTCAACCTGACACTTAAGGTGAAGTGCTGAAAGCACACTGTTTCATCTCAGAACAAGACAAAGAAGCCCGCCATCCCCATGTCCATATAATGTTGTACTGGGTATCCCATGTACAAAATAAGGCAAAACCGGCCAGGCGTGGTGGCTCAAGCCTGTAATACCAGCACTTTGGGAGACTGAGGCGGGTGGATCACGAGGTCAGGAGATCAAGACCATCCTGGCTAACACGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATGGTGGCATGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCCTGTAGTCCCAGCTACTCCCAGATTCATGGCGTGAACCCGGGAGGCAGAGGTTGCAGTGAGCTGAGATCGCTCCACTGCACTCCAGCCTGGGGGACAGAGCATGAGACTCTGTCTCAAAAAAATAAAAATAAAAATAAGGCAAAACCAAAGCTATAAGAATTAGAAAGAAAAAAGCATTGTTTGCAGTTTATGTGATTGTCAACCTGGAAAATGATTGATTAAAATTCACAAGGGAAATTACCAGTTTTGCTGGATACAATTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGTCTTGCTCTGTCGCCCAGGCTGGAATGCAGTGGCATGAGTCTCGGGTCACTGCAAGCTCCGCCGTCTGGGTTCAAGCAATTCTTACGCCTCAGCTTCTCGAATAGCTGGGATTACAGGTCCATGCCCCTATACCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGATTTCACCATGTTGGCCAGGCTAGTCTCGAACTCCTGACCTGAAGTGATCCACCTGCCTCAGCCTCCCAAAGTGCTGGTATTACAGGCATGAGCCACTGCACCTGGCCAGAAATGTTTTATTTATATTTGTCAGCAACCAGCAAAGGTGTAATATTTTAAAAGATAACATTTATAATAGCATCAGGAATATAAAGCATCCAAGAATTAATCTAACAAAAGATGTACAAGACCTTTAGATGGAGAAAATTATAAAAAGAAAGATGGTGCATAGATCCAACCCTGAAGTTCATGTTTGCGGTTGCTTAAGGCAAAGAACCTCTGACTTCAGTAAGGTGACGTCTGAGTCTTAGGAAAACCTCAGTCAGCCTGTCCTGCCATAATGTGCCCCACTTGGGGAGAGTAGGGACAGTTTGGGCAACACCTCCATTGGCTGATCAGCTTCAGCATTTCAGATGTGGTGGTTTTCCCCTTGAAAGCTCCTCCTTATTTCTAAAGTAGCTTTATGTGGATAGGGCACCAGGTATTACAGTCTACCTCTTACTGGCCTGCAAAATCAGATATCCTCAGAGGAACAAGGTACATGCCAGCCTTAGAGGAATTTAATTTTCCAGTGACTATACAAGAAGACACATCATCATGTCTTGGAAATCTTGCATAGAACTTCTGCTTACTGACTGCAGCTGTAGGAGACAAGAAAACACAGGAGGGCATTTTGCTGCCACTGCCAAACCAGTCCTGGGCTCCCTTGTGTCCAGCTATGTACTCGCCTGATGGAGAGCTTAAACTGCCTTTGAGCGCCCTTTGATTTGACACCACAGAGACTGTGAAATTCTCTGGGAGCATGGCTGGTTGGAGATGAGAAGTTTTTTCATGGAAGCACCTGGTCCCCTCACCTCTAACACAGGCCACAGAGGACGATGGGACTGAGTTTTAGATTACTGATGTGCATAGAAACAGAAGCCACCTGCCACAACCTGGATCACTGCCACTAGCATCAGAGCAAGCGAGGAGTAGATATGCCTTTGTCTTGTCCTGGCAGTTCCTCAGGATGGATAAGTGTGTGCACCTGCCCAGCCCTGACCCTGCTGTTTGTAACTCAGTAAATTACATGTTGTAATAGCAACGAAAGGATTTTCCACTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGAGACGGAGTTTCACTCTGTCCCCCAGGCTGGAGTGCAGTAGTGTGATCTCGGCTCACTGCAACTTCTTGTCTCCGGGGTTCAAGCGATTCTCCTGCCTCAGCTTCCCTAGTAGTGGGGACTACAGGCATGCACCACCATGTCCAGCTAATTTTTGTATTTTTTAGTAGAGACGGGGTTTCACTATATGTTGGCCAGGCTGGTCTCAAACTTCTGACCTCAAGTGATCCACTCACCTTGGCCTCCCAAAGTGCTGGGATTACAGACGTGAGCCACCATGCCCGGCCAGGATTTTCCACTCTTGAAGGGAGTATTTTGTTGTCACTTCAACTCGCTGTTTTTTTTCCAG
Seq C2 exon
ACAACCTCAAATATGACCACACTACAGCCTGTACACAACAAGACAGTTTATCTTGTCCATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196150-ZNF250:NM_021061:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.150 A=NA C2=0.110
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)