GgaINT1030679 @ galGal4
Intron Retention
Gene
ENSGALG00000004819 | ZNF767
Description
zinc finger family member 767 [Source:RefSeq peptide;Acc:NP_001265069]
Coordinates
chr2:507073-507920:+
Coord C1 exon
chr2:507073-507177
Coord A exon
chr2:507178-507806
Coord C2 exon
chr2:507807-507920
Length
629 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGA
5' ss Score
3.01
3' ss Seq
GAGTTTCCTCTTTACATTAGCAG
3' ss Score
2.06
Exon sequences
Seq C1 exon
ATTATTCAGTCTCCAGATCTGACTTGTCCCAGCTTCAGAGAGGAGAAGCGCCCTGCAGTGAGGTGACCTCAGCACAGAAGGAGGTTCCTACAGAACCGAGTGCAG
Seq A exon
GCAAGAGATGAATTGATAACATTTTTATCCTTGGGGATAATGGCTGTGTGGTGTTGTCCCCAGACAGAGGACATCACAAGGTGATGGTCCTGATTTACTAGAGAAGGAGATTCTCAAGAAGAACAGGCTCAAGGGGAATAACAGAGTGTCAGAAAACATGTAGTGGGTTTGATTTTTTCCTATTAGCAGAGTATCTGTTTAGGCCTGATGCAGGCAACTCAGGCAGCAAAGGAGTGCAGTGCCCTAGAAAACAAGAGAAACTTGAAGGAAAAAACAGTGTTCGGGGGCGTGAAGGCAGTGTCTGTGGGGCTGGGCGGTCACTGATCGTGTTGGGGGGCTGAAGGGGTCCTTCTGGGGCTGGGTGTATGCTTAGACCCAATGAGTGTTGGTCTGAATGTGTGTGCTTGGACGTAACACCGGGGAGGATGCTGTCCTGAAACATTGTCAGCTGTGAGATAAGACGAAGCCCCCTCCCTACAGGGCTGAGAAAAGCTCTCAGTGGTAGGAGCAGGAGATGCTGGGGAGAGGTTATATTAGAAATTGGGGTGGCTGGGAGCAAGCTGGGTGCATCGAGGGAGGAGCCGAAGTGTGCTGTGATACGCAGTAAAGGAGTTTCCTCTTTACATTAG
Seq C2 exon
CAGACTTCAGCATTCCAGAGCCAAGCTTCACAGGTACTCTGAAGCAAAATGAAGAGGTGTGTGCGGAGGAGCAGGAAGCCACGGAGGGTGCAGAGTTTACTGAGCTCAGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004819:ENSGALT00000039361:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.676 A=NA C2=0.863
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTATTCAGTCTCCAGATCTGACTTG
R:
CTGAGCTCAGTAAACTCTGCACC
Band lengths:
214-843
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]