GgaEX1065624 @ galGal4
Exon Skipping
Gene
ENSGALG00000004819 | ZNF767
Description
zinc finger family member 767 [Source:RefSeq peptide;Acc:NP_001265069]
Coordinates
chr2:507073-515588:+
Coord C1 exon
chr2:507073-507177
Coord A exon
chr2:507810-507920
Coord C2 exon
chr2:515493-515588
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTTCCTCTTTACATTAGCAGACT
3' ss Score
6.14
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
ATTATTCAGTCTCCAGATCTGACTTGTCCCAGCTTCAGAGAGGAGAAGCGCCCTGCAGTGAGGTGACCTCAGCACAGAAGGAGGTTCCTACAGAACCGAGTGCAG
Seq A exon
ACTTCAGCATTCCAGAGCCAAGCTTCACAGGTACTCTGAAGCAAAATGAAGAGGTGTGTGCGGAGGAGCAGGAAGCCACGGAGGGTGCAGAGTTTACTGAGCTCAGTGTGG
Seq C2 exon
AAGACAGCAGTATCCGTGTTAAGGAAGAGGAAGAGTCGTGCACAGCTGCACAGGAGGAGCTGGAGGCTGCGGGAGCCGTGCAGGAGCCGTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004819_MULTIEX1-1/3=C1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.676 A=0.863 C2=0.825
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTCAGTCTCCAGATCTGACTTGT
R:
GCCTCCAGCTCCTCCTGTG
Band lengths:
170-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]