BtaEX0041532 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002810 | ZNF777
Description
zinc finger protein 777 [Source:HGNC Symbol;Acc:HGNC:22213]
Coordinates
chr4:113243382-113259435:-
Coord C1 exon
chr4:113259309-113259435
Coord A exon
chr4:113257223-113257336
Coord C2 exon
chr4:113243382-113243633
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTTCCTCCTGCCCAGACT
3' ss Score
8.02
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GTCCCTGTGACATTCGACGACGTGGCCGTCCATTTCTCGGAGCAGGAGTGGGGGAACCTGTCCGAGTGGCAGAAGGAGCTGTACAAGAATGTGATGCGCGGCAACTACGAGTCTCTGGTTTCCATGG
Seq A exon
ACTATGCAATTTCCAAACCAGACCTCATGTCACAGATGGAACGAGGGGAGAGGCCGGCCATGCAGGAGCAGGAGGACTCTGAGGAGGGCGAGGCGCCTGCCGATCCCAGTGCCG
Seq C2 exon
CTCACGATGGGATCGTGATTAAGATCGAGGTGCAGACCAACGACGAGGGCTCGGAGAGCCTGGAGACGCCGGAGCCCCTGATGGGCCAGGTAGAGGAGCATGGCTTCCAGGACTCGGAGCTGGGGGACCCGTGTGGCGAGCAGCCGGACCTGGACATGCAGGAGCCGGAAAACCCGCTGGAGGCATCCACGGAGGGCTCAGGCGAGTTCAGCGAGCTCAAGCAGATGCTGGTGCAGCAGAGGAACTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002810_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.808 C2=0.988
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCAACTACGAGTCTCTGGT
R:
CATCTGCTTGAGCTCGCTGAA
Band lengths:
256-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development