MmuEX6004170 @ mm10
Exon Skipping
Gene
ENSMUSG00000071477 | Zfp777
Description
zinc finger protein 777 [Source:MGI Symbol;Acc:MGI:1919556]
Coordinates
chr6:48029123-48042155:-
Coord C1 exon
chr6:48042029-48042155
Coord A exon
chr6:48037555-48037668
Coord C2 exon
chr6:48029123-48029374
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTTTCCTTCCTTCTGCCCAGACT
3' ss Score
8.48
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTTCCTGTCACATTCGATGATGTCGCCGTCCATTTCTCTGAGCAGGAATGGGGAAATCTCTCTGAGTGGCAGAAGGAGCTCTACAAGAATGTAATGAGGGGCAACTATGAGTCTCTGGTCTCTATGG
Seq A exon
ACTATGCAATATCCAAACCGGACCTCATGTCACAGATGGAGCGTGGAGAGAGGCCAGCCATGCAAGAACAAGAGGATTCTGAGGAGGGTGAGACGCCCACAGATCCCAGTGCTG
Seq C2 exon
CACATGATGGCATCGTGATTAAGATCGAGGTGCAGACCAACGATGAGGGCTCAGAAGGTCTGGAGACACCAGAGCCACTGATGGGACAAGTGGAGGAACATGGCTTTCAGGACTCAGAGCTGGGTGACCCCTGTGGAGAGCAGCCAGACCTGGACATGCAGGAACAAGAGAACGCGCTCGAGGAGTCCACGGAAGGCTCCAGCGAGTTCAGTGAGCTCAAGCAGATGCTGGTGCAGCAGAGAAACTGCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071477-'12-12,'12-10,14-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.810 C2=0.988
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(95.1=90.7)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGCAGAAGGAGCTCTACA
R:
GAGCGCGTTCTCTTGTTCCTG
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types