HsaEX6011155 @ hg19
Exon Skipping
Gene
ENSG00000196453 | ZNF777
Description
zinc finger protein 777 [Source:HGNC Symbol;Acc:22213]
Coordinates
chr7:149133666-149151328:-
Coord C1 exon
chr7:149151202-149151328
Coord A exon
chr7:149148090-149148203
Coord C2 exon
chr7:149133666-149133917
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTTCCCTTTCTTCTGCCTAGACT
3' ss Score
8.96
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTCCCTGTCACATTTGATGATGTTGCTGTGCACTTCTCGGAGCAGGAGTGGGGAAACCTGTCTGAGTGGCAGAAGGAGCTCTACAAGAACGTGATGAGGGGCAACTACGAGTCCCTGGTTTCCATGG
Seq A exon
ACTATGCAATTTCCAAACCAGACCTCATGTCACAGATGGAGCGCGGGGAGCGGCCCACCATGCAGGAGCAGGAAGACTCTGAGGAGGGCGAAACGCCGACAGATCCCAGTGCTG
Seq C2 exon
CGCACGATGGGATCGTGATTAAGATCGAGGTACAGACCAACGACGAGGGCTCAGAAAGTTTGGAGACACCTGAGCCCCTGATGGGACAGGTGGAAGAGCACGGCTTCCAGGACTCAGAGCTGGGTGACCCCTGTGGGGAACAGCCAGACCTGGACATGCAGGAGCCAGAGAACACGCTGGAGGAGTCCACGGAAGGCTCCAGCGAGTTCAGCGAACTGAAGCAGATGCTGGTGCAGCAGAGGAACTGCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196453-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=0.885 C2=0.988
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGCAGAAGGAGCTCTACA
R:
GACTCCTCCAGCGTGTTCTCT
Band lengths:
250-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)