RnoEX0101693 @ rn6
Exon Skipping
Gene
ENSRNOG00000033639 | Zfp777
Description
zinc finger protein 777 [Source:RGD Symbol;Acc:1566056]
Coordinates
chr4:77688858-77704377:-
Coord C1 exon
chr4:77704251-77704377
Coord A exon
chr4:77700069-77700182
Coord C2 exon
chr4:77688858-77689109
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTCCCTTCTGCCCAGACT
3' ss Score
8.45
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTTCCTGTCACATTTGATGATGTCGCCGTCCATTTCTCTGAGCAGGAATGGGGAAATCTCTCTGAGTGGCAAAAGGAGCTCTACAAGAATGTAATGAGGGGCAACTATGAGTCTCTGGTCTCTATGG
Seq A exon
ACTATGCAATATCCAAACCAGACCTGATGTCACAGATGGAGCGTGGCGAGAGGCCAGCCATGCAGGAGCAAGAGGACTCTGAGGAGGGCGAGACGCCCACGGATCCCAGTGCTG
Seq C2 exon
CACATGATGGCATCGTGATTAAGATCGAGGTGCAGACCAACGATGAGGGCTCAGAAGGTCTGGAGACACCAGAGCCGCTGATGGGACAAGTGGAGGAACACGGCTTTCAGGACTCAGAGCTGGGTGACCCCTGTGGAGAGCAGCCAGACCTGGACATGCAGGACCAAGAGAACGTGCTAGAGGAGTCCACTGAAGGCTCCAGTGAGTTCAGTGAGCTCAAGCAGATGCTGGTGCAGCAGAGAAACTGCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033639-'6-12,'6-7,8-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.872 C2=0.988
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGTGGCAAAAGGAGCTCT
R:
CAGTGGACTCCTCTAGCACGT
Band lengths:
258-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]