GgaEX1065625 @ galGal4
Exon Skipping
Gene
ENSGALG00000004819 | ZNF767
Description
zinc finger family member 767 [Source:RefSeq peptide;Acc:NP_001265069]
Coordinates
chr2:507807-515588:+
Coord C1 exon
chr2:507807-507920
Coord A exon
chr2:509060-509249
Coord C2 exon
chr2:515493-515588
Length
190 bp
Sequences
Splice sites
3' ss Seq
CCCTTTGTTTTTCCCCTCAGTTC
3' ss Score
11.64
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
CAGACTTCAGCATTCCAGAGCCAAGCTTCACAGGTACTCTGAAGCAAAATGAAGAGGTGTGTGCGGAGGAGCAGGAAGCCACGGAGGGTGCAGAGTTTACTGAGCTCAGTGTGG
Seq A exon
TTCCAGCTGATGAGGTGATAGCATTCAAAATAGAGCAGCTGGACTCTGATGAATGCCTGCAAAGCTCAGAGTGTCCCACAGCTTTATCCGGGGAATCGGAAGACATGTTTTTTCAGAGTGCCAACGAGGCGCTGCCCTTTGACAGTCAGTTCAGCTCTCCTGTGCCCCTGGGAAACCAGAGTCTGAGCAG
Seq C2 exon
AAGACAGCAGTATCCGTGTTAAGGAAGAGGAAGAGTCGTGCACAGCTGCACAGGAGGAGCTGGAGGCTGCGGGAGCCGTGCAGGAGCCGTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004819_MULTIEX1-2/3=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.863 A=0.375 C2=0.825
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000039361fB14059
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTTCAGCATTCCAGAGCC
R:
CTCCAGCTCCTCCTGTGCAG
Band lengths:
178-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]