GgaINT0090912 @ galGal4
Intron Retention
Gene
ENSGALG00000004819 | ZNF767
Description
zinc finger family member 767 [Source:RefSeq peptide;Acc:NP_001265069]
Coordinates
chr2:507807-515588:+
Coord C1 exon
chr2:507807-507920
Coord A exon
chr2:507921-515492
Coord C2 exon
chr2:515493-515588
Length
7572 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TACCTTAATTCCCCACGCAGAAG
3' ss Score
6.06
Exon sequences
Seq C1 exon
CAGACTTCAGCATTCCAGAGCCAAGCTTCACAGGTACTCTGAAGCAAAATGAAGAGGTGTGTGCGGAGGAGCAGGAAGCCACGGAGGGTGCAGAGTTTACTGAGCTCAGTGTGG
Seq A exon
GTGAGTTCTGAGCAGTGCCACAATATGCTGTGCAACTGGGGACCTGGGGAGAGCCGGTGCTGCATGAGGGCACCCCAGATGTTTCCCCTGCATGTGCAGGGCCCTGGGGAGAGAGCAAGAGCCATGCTGAGGTTAGCAAAGCAGACTGAAATATTATGGACAGTTTTACACGTAGGAAGATTGAAGTGGTGGGTAGGCAAGGCATTTCTGATATTTTTCCCTGGAATTTCTTCTGCTTGGTGGCAGCAGTCTCAGAGGAAGGAGCTGTGCTCCAGAAGAGTCCCTCAACAGATACCTGAGGGCTGGGACAGTCACCAGCGAGCTGGGATGGCTCTGTTATTCCCAACAACAATGTAATACTTGATTATTAGGCTGTTCCCAGCTCACCGGTCATTTCCTTGTTTCATGCTTTCTCCCTCACTCTCAGTCCTGGTCTCTGTTTCTTCTTGCGCTACATCAGAGGCATCCAAAGGACTTGTTCAGTTTTTGTTGGTATTTGCCCTGCTGTGAGTGCTCTTTCTCATGTCCACCCATAGTGTCACCTCTGTGTGTTGTCACCTTGTTACATACACATCCAGAGCAGCAGTGGGCACATCTCAAGTCAAAAATTGGGAGTGTTTATGTGTTCCCTTTCAACAAAAAGGCTGCACAGGTGGGTCACCACATCCTGGGAGGAGAGGGAAGGTGGATCTCGTGGAAAGGGCCACCACTATCTGAAGAGTGTGAAATACTGGGACATTGGTGTATGGAGGGCAGCAGATGCACTGGGAAGCGAAGTCCCACCCCAGGTTCATGAGATCTTTGCACCTGGGAGGAGGAGGACAGCTGGAGGCAATTTTGGAAACTCTGGGCAGCGCTGAAGTGCGTGCTGTCTTGGAAGGCAGCACTTCTCTCTGCTCCCTCCCTTGTGGCTTCTCACACTCACTGCTAAGCCAGCTGAAAGGGAAGCATTCCTGTGCTCTTCACTCATATTCAGTCTTCTTTTAGTCCTTCAGTTGACTCGATTGGTACAGCAGTGTTTCATGCTCCCTGCATAAGAGGGGCTTGTTTGATGCAAGGGTGGCAGGGGAAGGACAGGGGGATTTTAGAAGTATCTCCTGTCTCCCGGCAGTGAATGTCCCCTTTGTTTTTCCCCTCAGTTCCAGCTGATGAGGTGATAGCATTCAAAATAGAGCAGCTGGACTCTGATGAATGCCTGCAAAGCTCAGAGTGTCCCACAGCTTTATCCGGGGAATCGGAAGACATGTTTTTTCAGAGTGCCAACGAGGCGCTGCCCTTTGACAGTCAGTTCAGCTCTCCTGTGCCCCTGGGAAACCAGAGTCTGAGCAGGTTGGTGCCATCTGCTTCTGGGGAAGGTGATCTTGGTGAAATCAGCACCGTCACATTCTACAGGCAAGAGTATCCCGAGGAGAGGCCTCACTCATGTGCTGCATGCAGGAAGGGCTTATGTCTGAAGAAGATGCTGATGATGCAGCAGCAGAATCACAGCACGCTGTGTGGCGGTGAGCCCACTGAAGATGAGAACATCTTTATCCATCAGCCTCACCAGCAGATCCACATTGCCACGGAGAGCTTCAAGCAGAACCTGAAGGTAAAAGCTCCTGCTGGCATCTCAGCCACAAACAAGGCACGTGGCAGCTCCAGGTGCATGAAGAGCATCAACACCAACCGCAACAAACCAGGTCACCCACAGGGGAAGCCTTACAAGTGCAGCAAGTGTCAGGAGTGCTTCTCCCAGAAGAAAACCCTCATCATCCACCAGCGCGTGCACTCAGGCCGGAGCCCGGGGGTCCTTTGGTGCTCATACTGTGGGAAGACTTTCAGCCATCCCTCCAATCTGATCCGGCATCAGAGGATCCACACTGGTGAGAGGCCATACCAATGCAACGAGTGCTTGAAGCGCTTCACCCAGAAGCAGCACCTCCTTCAGCACGAGAAGATCCACCTGCGAGAGAGGAACTGCGCGGCCAGGAATCATACAAGGGAGGCACCGCTATAGGGCTTCTAGGTTGTGCAGGGCTCACGTGGCCCTGTAGCCCCTGGGTGAGAAAGGCAGGAGAGGACAGAGTCTCTGCTTCTCAGCATTGAAGTCTCTCTATTTATCATAAAGGTCCAAGCAAAGTAGAATTAGGATCCACCATGGCATGACTGCCCTCTTCTTCGTGGTGGTGATGATGCAATACCTCATAGTTAGCTGAAAATCTCTTAAGAACAAAAGTGTTTAGGGTCTCTCCAGGTTTGAGTCAGTTATTTGAACTGGTTACAGCCAGGTAAAGTTTATGGAAGCAGCTGCTTTTCACCTGGAGTTTCCCTCCATACATTCCTTGATGAATTTCTGCTGTGTTTGGTTTCATGGGCAAGCTTGAGTGACACATTCAAAAGACTCCAGGATATTAAAGACATGCATGAGGGAAGTCTCACTGATGACTTGCAGGGAAACCCTGGGTTTGTACCGCAGTGACAGGGGAAATCCCTTTTTGTCTTGCTTCTGAGCACTAATAGAGGCAGCGTTGCCCAGGCTCCTCCCCCAGTACCTCTTGGGCTCCCAGTGGAACTGAAAGGGGAAACAACTGGTAAGCCAGAGGTGGTGCTCAGCTGTACACTCAGGCTGAAGTGAGCGTTGGGATAACATTCTGCTAACTGCCTCAACATTAACACTTTTTCCTTTGTCTTTAATTATTGTCTTCATATCTCTTTCCTCCTGATAGCGTGGGGTACGTATGCTCTTTTGATATTAGAGGTGGGCTTTTATTATATCCCAAAATGAAACACGTTCGGCCAACGGCCCAAATACATCATGCAACTTCAGGGCTCACAATGCTGCCTGACCTGGATTAAAGCTGCTACTTGATCTCCCTGTTGCTCATGGGGCTTTAGAAACCTCTCTGCCACTTCCTGGTCCCCAGGTGTCTGCTAAGGGGCAGGTGCAGGGGGCTGGCTCATGCTTGCAGGGACAGAAGTGTTCCTGGGCAGGTATGTTAGCCTGGAAGCTCTTCTGTCCCAGGAGTGAGCTCTTCCCAGGACCTTACTGTTCAATGCCACCTGCCCTGATGCCGGAGCACAAGACAGGAGTGCTGCTGTGCCTGTTGCAGCCAAGCAGCAAGGCCAGCTCCAAGCTCTGGTTTAAGCTAACCTGATTCCTGCAGAATCTGGAGCAGGTTGGAGTGTGCCTGTGTGAGCCTCCTCATGCTGCAGGAGTAGCACAGAACCACTGCTGCAGGAGTGTCAACTGCTGCAGGCATTTCTCTGTCACATCTGCCTGTGGCCTCTTCTCAGCTTAGTGCTGCTGAGGTCTTTGCTTTCTGACATGTCTGAGCAGCTCTGTGTGTGGTGAGCCTCTCTTTGTGCGCTCAACCATTTTTTTCCCCCCAAAAAATCTCTGGTGACAGAGTGTTCCATGTTTTGTTACTTGTTCAGTGCACGCGTGGTACCACGAAGCAATGAACGCGGACCAGTTTTGCTTTGCTGTGTGACGTGCTAAGGAGAATCTCTTGGCAGTTAGCAGTAGAAGGCATTTGAAATCCAGACAGTCTGTTTGGGCCTGTTCAGTAAACTGATCCGTCCTGCAGTGCTTCCTGCTGACAGCTGCTCAACTGCTTGTTTCCTTCTTCCCTTTTTGTTGCGTAGACTTGTGAGCCTCCAGGGCAGGGAGCACATTTCTGTCATTTGCAAAATGCCAGTTCAACCTGCAGCGGTAGATACTTGATTTTTTTATTACCATAACATTAAACTTGAACGGATTAAAGCTGTGAAGCCTTAAGTGCTTCTTTTTTTTGGGAGAGGTCTTTTTGAAAAGCACTTTACCTGCTTGCTTGGCTCTGGGTGTGTGTCCATAGGGAAGGACTGTGTGTGTGGTCACCGAGCTCCCAGGGGTCCTGCTGTGTTTGTAGTACCCTGCCTCACTGATGGGAAGACTCACCTACCTTGCATCAGAAACACAATGGAGTGGGTTTTCATTGCATTTTTTTTGTTTGTTTTAATGCTGCAGTAGAATCTGAGCATGAGAGCTGATTTCCATGTGTGTGTATCTGAGATTCAAACGGTGCCGCAGAGCCAATAGCATTTACAAATAGGATGGTAATAAGCTCGCTGTGCAGTTCTCACCCTGCAGGCAAACCAAGTCGACGCTGCCAGCGAAAAGTTTTCAGCAACCACAGGATTGCAGCCATCATCAGTTCAGCCCGTTGGAGTCGGGGCGAGCAGGATTATTCTGGGATACAAACATGGAGGTGCTGTTGCGTGAAGCAGCAGTGGTGCTGTGATGGCAGCAGCCTGAATGTTGGATAGGATCGCTTTTGTGGTGGATTATTCTACAAAGCAACAACTACAGGCGACTTTTCTGTGCTGTTACGGCATGATACAAAAGGACAACAGAAACCATGGAAGCCTGCAGTGTTACCAACCCTGCTCCATGTTGCACTGCTCTTGTGTATGTTCCAGTGCTGACCTCTTACTGCTTAGTTATCGTTAGACAGTTTGGTTTTCAACAGTGATTGAATAAAGAAGCTGCCTGCCTACAGCAGCTGATGTGGTGTTCACATCTGAAAGGTCTCCATAACATCAGCCATAAAAGAACTGGTGTTGGGATAGTGAAAAGTTGGGTGTTTCAGTATCATAGAATCATAGAATGGCCTGGGTTGAAAAGGACCACGATGACCATCCAGTTCCAACCCCCTGCTATGTGCAGGGTCGCCAACCAGCAGCCCAGGCTGCCCAGAGCCACATCCAGTCTGGCCTTGAATCCCTCCAGGGATGGGGCATCCACAGCCTCCTTGGGCAACTTGTTCCTGTGTGTCCAGTAGTGCGGGCTGGGAAGGATTACACCATCTTAACAGCACTGCCATGGTTTTAACTGTGAGACTTCATATGGTAGCTGCTGCCGAAACATCAGAAGTGCTGATGTGCTCCGTATTTCATCACTTATTGATGCTGCCTTTGATAATACAGATGAAGCAGTACTTTGTGCAGTGAGTCATAGTTTCCCTGTTGGAGCCGAGCTCTTGTATTTCAGAGATCGATATGTATATTTATAACAGATCACGGAGCTATTTTGAGGTTTGTGCTGCTTCCATTTTAAAAATTCAGCCCTGAATCCAAGAAGAAATGTCAAGCAGCACAGAAACGCACTGCTCTTCCAAGGAGAAGAGAAGAGAGAAATCCTTCCCTCGCACAGATGCGGTGATGCTTACAGGACGGAGCAGAAGCTGCAGGGAAAGGCCAGGGAAGATGCAGAGATCAGGAGGACGTATTTCAGGAGCATGAGGTCTCCCACGTGCACCCAGAGATGCGTTGTGGTTTGTTCATTGTGGAATACCTTCTGCTGTTAGAACACCTCCACATCTTTTATTGCTTCACCACTTCAGATTTGCTTTGTGAAAGCCTCTCTGGGCATCTTGCCACATCGAGGCAGGAATTATTTGCATGCCATGGGAATGCTGCCACTTCGGTGTTCTGGAGAGGCACGCTGACATCCAAGCTCCTGTGCACCAATTAAACAGAAGACACAAGAGTGTGTGTAGGTACAGAGAAGGCCCTGTCTTCTGGCAGCCCCTCGCCAGCAGGATCAGAACAATGCATGTGCCACACAACTGTCACCTGGCTCCGTGTCCAGCTGGGGTGGGCCAGAACCTATGGATGCGCTGAAGGAGGGGATCTCTGCTCCAGCAGCCCTTGGGGTGGCCCCGTGGAGGACACACTGGAGGAGCCCACCTGGCTCTGGTGGCACAGAACCACATCTTTGGCATCACGGAGCACCTCTCGGCCAAGAGCATCTGGTGCCATCTACATGGACTTGTGCAGCGTGTTTGGCACTGTCGCACACGGCGTCCTTGTCTCTGTGTTGGAGAGATGTGGATTTGATGGATGGACCATTTGGTGGATAAGGAATGGACTGATGCTTGTACTCAGAGTTGTGGTCAGTGGCTCAATGTCCGCATGGATTGGTGACAAACGGTGTTCCTCAAGGGTCGGTATTGGGACCAAAGCCATCTCATGTCTTTGTCAGCAACTTTGCTGATGACACCAAGCAGTGTCCTGCAGTCTTATACTGGAGGGAAGGGCTGCCACCCAGGCAGGGCTGAGAGCTGGGCCATGCAAACCACCTGCGGTTCAACAAGGCTGAGTGCTGTGCTACAGCCTGGTCAGGACAGTGCCAAGCACTGATATGGGCTGGTTGGATTGAGTGCAATCAAACAAGGAGGAGGACTTGGGGCTGTTGGTGGATGCAGAACTGAACACCAACAGGCACAGTGTGCTTACAGCCTGGAGAGCCACCCGTGTCCTGTGCTGCACCAAGGCAGCGTGGCTCTCAGATCCCCCTGCAGTGCTGGGCTCAGCTCTGGGGATGAGGTGAGGAGGTGATGGTCCAGCGCCTGTGATGGAGGCACCTCTGTGGGGACACCTGCATGGAGTGGAGGACTTCGGGTGCTTTTGGCCTGACCGTGGAGGTCTCCCATTAGGACGGTGCTCCTCTGGAGGTTGGCAGAGCAGAGCCATGGAGGTGACGCCCTCCAAATCCCAGCTGGGATCCCACAGCGGTGATGTCTGCTGTCCTGTGGCCGTGGTGGCACCACGGAGCTCCCGAGAGGAACCACGGGCACGAGGACGGGCCTTGGGCTCCTTCAGATCGCAGACCCGCAGTGTGGCTCAGGTTGGGGCTCCTCGGGGTCCCTCTGGTCCCCCCACCCCATCAGGGCCCCCCACAGCAGAGCGGGGTGGGAGATGCCCAAGGAGGAGAGAGTCCCCAGTCGCCGTCCCCGTGCAGGGCTGTGTGTGTGCCGGGAGCTCCTGGGCTGCGGTTCGAGCCCAGCGCCGGGTGCTGCCCCGGCACCGCTGAGCGCAGCGCGGCTCCGTCCCTTCGCAGCCCCCATTGGGCTCCGTGTCCCCGCCCTGCCCTCCCAGCACAGCAGCCCCGCCCCCAGGTGCGGTGTGCGGGGCGGTAGCAGAGGGCGCCGCGGGGCCGCCATTCGTACGGGCATGGCCGGGCTGCTGCTCGTGCGGGCGGTGTCGGCGCGGCTGCTCCGCCTGGAGGGCCGCCTGGCGCGGGCGGAGCGGCGGCTGAGGGCCGCGCTGGCGCTGCGGGGCCGCGTGCGGGCATTGGAGCGGCGTTTGGAACCGCCCCGGGGAGCGCCGCGGTGCGGGGACGGCGCGAGGGGTGCGCGGCAGCGCCGGGACTGCGGCCGAAAGGACGGGGGGGGGAGCGGAGCCGCCGCGGGGAGCGGTGAGTGGGACGGAGGTCTCGGGGGCTGCGCCGGTCTGAGCGGTTCCGTGTGACACCGAGCGGCGCGGCGCGGCTCGGCGGTGCGGGACCGGAGGGCGGCGGGCGGGCAGCGCTGCATCACGGCACGGCACGGCACGGCACGGCGTGGCACGGCGTGGCACGGCAGGAGGAACCTGTGCGCATCTCTGGAGCTCGGAGCTCCCCTGAGAGCTTTGGGAGATGTGCCCGAGGGGTGGGGAGGGGCCTCGCTCAGCGAAGGGCGCAACCAGAGGGGGGTTCTGCAGCGCGAGCCCGGGGAGAGCTGGAGTTCGTTTGGGATACAGGAGCTGATGTTACCTTAATTCCCCACGCAG
Seq C2 exon
AAGACAGCAGTATCCGTGTTAAGGAAGAGGAAGAGTCGTGCACAGCTGCACAGGAGGAGCTGGAGGCTGCGGGAGCCGTGCAGGAGCCGTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004819:ENSGALT00000039361:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.863 A=NA C2=0.825
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]