BtaINT0166118 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002370 | ZNF792
Description
zinc finger protein 792 [Source:HGNC Symbol;Acc:HGNC:24751]
Coordinates
chr18:45890809-45891786:-
Coord C1 exon
chr18:45891657-45891786
Coord A exon
chr18:45890932-45891656
Coord C2 exon
chr18:45890809-45890931
Length
725 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
CTGCTCCATCTTCCCCCTAGGAC
3' ss Score
11.78
Exon sequences
Seq C1 exon
CAGGGCTGTGTGACCTTTGAGGACGTGACCATTTACTTCTCCCCGGAGGAGTGGGGACTCCTTGATGAGGCTCAGAGACTCCTGTACTGTGATGTGATGCTGGAGAACTTTGCACTGATCGCCTCCCTTG
Seq A exon
GTAAGGCTTTTACACCCACCCAGGTGTCCTGAGCTCATCTCCGCCCATTCCCTCTTCCCAAGAGGTGGTTCTTTCCTTCCCACAGCTGCGCTGTGGGCATTGCTTCCTCCCCTCCCCACTGCCTTTGTTTTTGGGGCTATGATGGGTCTTTGTTGAAATGTTCAGGCTTCTCTATTTGCAGTGAGTGGGGTTCTCTAGTTGTGGTGTGCAGCATGTGGGTTCTTAGTTCCCCGACCAAGAATTGAACCCAAGTCCCCTGCATTGGGAAGTAGATTCTTAACCACTGGACCACCAGGGAAGTCCTCCCACCTCTTCAGGTATATGTGCTGTGGATCCAGAGCTGAACTGTGTGCAGGGTCCCATGCTCTCCCCAAGCAGCCTCAACACCTACTGTCTCAAAGCCTGGTGGGGAAGGGTCCTAGAAGGAGGAGTCTTGTGGTCAGCCCAGCAGATCCTGTCTGACTCAGCCACGGATCTCCTGGATGATTGTTCAGATCTCTGACAGTTCTGTTTGGCTCCTTTGCTTTAGCTAACATTGCCTAAGGCCTGACTGCCAGGAACTCTAGGCACTTATGTGGTCACTGTTTGCCATGACCACTGGGATGTTCCTGCCAGATCTCCCTTGTGTGTTCCTTTTGTAATTATGTTTCCTTTCCTGTGTTCTATTGTGGGATAATTCACCTGGGCAAAGTGCTGGTCCCTTATCTGCTCCATCTTCCCCCTAG
Seq C2 exon
GACTTGCATCTTTCAGGTCTCACATAGTTGCCCAGCTGGAGATGGGGGCAGAGCCCTGGGTGCCTGACCAAGCGGACATGACTTCAGCCATGGCAAGAGGGGTGTATAGAGGGCTTGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002370:ENSBTAT00000017105:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=93.2)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGTGTGACCTTTGAGGAC
R:
AGCCAAGCCCTCTATACACCC
Band lengths:
247-972
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development