HsaINT0188421 @ hg38
Intron Retention
Gene
ENSG00000180884 | ZNF792
Description
zinc finger protein 792 [Source:HGNC Symbol;Acc:HGNC:24751]
Coordinates
chr19:34960235-34960994:-
Coord C1 exon
chr19:34960868-34960994
Coord A exon
chr19:34960358-34960867
Coord C2 exon
chr19:34960235-34960357
Length
510 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CCACTCTGTCTTTCCCTTAGGAC
3' ss Score
11.96
Exon sequences
Seq C1 exon
GGCTGCGTGACCTTTGAGGACGTGACCATTTACTTCTCCCAGGAGGAGTGGGTGCTCCTCGATGAGGCTCAGAGACTCCTGTACTGCGATGTGATGCTGGAAAACTTTGCACTTATAGCCTCGCTGG
Seq A exon
GTAAGGCTGTCACCCCTACCCCGGTGTCCCGAGCTCCTCTCTGCCTGTCCCCTTTGCCCAAGAAACAGCTCTTTCCTTCCCACAGCCAGACCGCTGGCACTGCTTCCATCCCCACTTTCCTGGTATGTGTGTTGTGGCTTCTGGGGCTGAGCTATGTGCATTGTTCCCTCCTCTCCCTGAGCTGCCCCCACACCTGCTGCCTGAAGCCTTGCAGGGAAGCTCCAGGCATGAGGGGTCTTGCGGTTAGCTGTGTGACTACCTCTGACTCGGCCATTCCCTCCTGGGTGATTATCCAGATCTGACAGTTCTGTGGTTTAGATTCTGTGCCTTTCCTCTTGCTAATATTTCCTAAGCCTGACTGTGCCAGGAATTCCAATCACTGATGTGGTTACTGCTTGCCGTGACCACCCAATGTCCCTGTGTCATACGGAGCTTCCTGTCTTGTAGTCTATCATGGGGTAGTTCAACTGGGCAGGTGCTGGCCACTGACCCACTCTGTCTTTCCCTTAG
Seq C2 exon
GACTTATATCTTTCAGGTCCCACATCGTTTCCCAGTTGGAGATGGGGAAAGAGCCCTGGGTGCCTGACAGTGTGGATATGACATCAGCCATGGCCAGAGGGGCTTATGGCAGGCCTGGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180884:ENST00000404801:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.107
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGTGACCTTTGAGGACG
R:
AGAGCCAGGCCTGCCATAAG
Band lengths:
247-757
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains