HsaEX0074380 @ hg38
Exon Skipping
Gene
ENSG00000180884 | ZNF792
Description
zinc finger protein 792 [Source:HGNC Symbol;Acc:HGNC:24751]
Coordinates
chr19:34956354-34964049:-
Coord C1 exon
chr19:34963630-34964049
Coord A exon
chr19:34960235-34960357
Coord C2 exon
chr19:34956354-34959571
Length
123 bp
Sequences
Splice sites
3' ss Seq
CCACTCTGTCTTTCCCTTAGGAC
3' ss Score
11.96
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
CGGGGAGGCTGAGTCCCCAGGAGCTGGGGACCCCGAGTTGGGGGCGGGGCGGCTGGGGCTACGCCCGTGAAGCTGCCCCGCCGGCTTTCCCGGACCGCGAGGGGGACAGTGAGGCCGGGACCCCCTCCGCGCCTTTGCACCAGCCGTGACCCCTTGCAACGGGGGTACCCAGCGGAGCTGCGCGCTCTCGGCGCCCCCGGAGCCTGCGCCCCGGGCCCCTTGCGCATTTTGCACGGGGGAGACTGAGGCTAGGAGTGCGACCCTCAGCCCGGGGTCACACCTCGTCTGGGGCACGGCCAGGTGGGTGGTAGCCTCAGCCTGCGAGACCCCCTACCCCCGCCCCGTGGTTTCCCGCACCGTGGGGCCCTGCTCTGACCACAGACTCCGATGGCAGCGGCGGCGCTGCGGGACCCCGCGCAG
Seq A exon
GACTTATATCTTTCAGGTCCCACATCGTTTCCCAGTTGGAGATGGGGAAAGAGCCCTGGGTGCCTGACAGTGTGGATATGACATCAGCCATGGCCAGAGGGGCTTATGGCAGGCCTGGCTCTG
Seq C2 exon
ATTTTTGCCATGGAACAGAGGGCAAGGACTTACCTTCTGAGCATAACGTTTCTGTAGAAGGAGTGGCACAGGACAGGAGTCCCGAGGCAACTCTGTGCCCCCAGAAGACCTGCCCCTGTGACATATGTGGCCTACGTTTGAAAGACATTTTGCATTTGGCTGAACACCAGACAACACATCCCAGGCAGAAACCATTTGTGTGTGAGGCATATGTGAAAGGCTCTGAGTTCAGTGCAAACCTTCCCCGGAAACAGGTGCAGCAGAACGTACACAACCCTATCAGAACGGAGGAGGGCCAGGCTTCCCCTGTAAAGACCTGCAGAGACCACACATCAGATCAGCTTTCCACCTGCAGGGAGGGTGGGAAGGACTTTGTGGCCACAGCAGGGTTTCTGCAGTGTGAGGTCACTCCCAGCGATGGGGAGCCGCACGAGGCCACCGAAGGTGTGGTGGATTTTCACATTGCACTAAGGCATAACAAGTGCTGTGAATCTGGGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180884_MULTIEX1-2/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.107 C2=0.226
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGACCACAGACTCCGATGG
R:
GGTTTCTGCCTGGGATGTGTT
Band lengths:
243-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development