BtaEX0041550 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002370 | ZNF792
Description
zinc finger protein 792 [Source:HGNC Symbol;Acc:HGNC:24751]
Coordinates
chr18:45888124-45891786:-
Coord C1 exon
chr18:45891657-45891786
Coord A exon
chr18:45890809-45890931
Coord C2 exon
chr18:45888124-45888287
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTGCTCCATCTTCCCCCTAGGAC
3' ss Score
11.78
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CAGGGCTGTGTGACCTTTGAGGACGTGACCATTTACTTCTCCCCGGAGGAGTGGGGACTCCTTGATGAGGCTCAGAGACTCCTGTACTGTGATGTGATGCTGGAGAACTTTGCACTGATCGCCTCCCTTG
Seq A exon
GACTTGCATCTTTCAGGTCTCACATAGTTGCCCAGCTGGAGATGGGGGCAGAGCCCTGGGTGCCTGACCAAGCGGACATGACTTCAGCCATGGCAAGAGGGGTGTATAGAGGGCTTGGCTCAG
Seq C2 exon
ATTTTTACTGTGGAACAGAGAGTGAGGAATCACCTGCTGAGCTCAGTGTTTCTGTAGAAGTGTCACAGAACATGAACTCCAAGGCAGTTTCATCCACCCAGAAGGGCTACCCCTGTAACCTGTGTGGCCTCCACTTGAAAGACATTCTATATCTGGCTAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002370_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.073
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=93.2)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGTGTGACCTTTGAGGAC
R:
GGTTACAGGGGTAGCCCTTCT
Band lengths:
247-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development