GgaINT0099974 @ galGal3
Intron Retention
Description
NA
Coordinates
chr2:412286-413496:-
Coord C1 exon
chr2:413370-413496
Coord A exon
chr2:412397-413369
Coord C2 exon
chr2:412286-412396
Length
973 bp
Sequences
Splice sites
5' ss Seq
TGTGTAGGC
5' ss Score
-1.07
3' ss Seq
TTTGTCTTGTCCTTGAGCAGACT
3' ss Score
6.37
Exon sequences
Seq C1 exon
GTGCCGGTGACTTTCAAGGATGTCTTTGTGGAGTTCAGCGGGGACGAGTGGGCCCTCCTGGATGATGAGCAGAAGGAGCTGCATCGGAGCGTGATGCAGAGCAACTGTGAAATGCTGTTGTCCCTGT
Seq A exon
GTAGGCATCTGCGCTGGTTTGGCGTTTGCCATCGCCGTCTGGGCTGCTCTCTCTGGGTTGCTTTCCTTTACCCCTCACTGGGATCTCCAGCCCCAAACAGTCAGCTCCAATTCTTGTCACCGCTGGGAGCAAGTGGAGGCTGGGAGGCTCAGGAGGGGGTAGAAAGTGCTCAGTGTCTTCTCCTTGTGGAGAGCTGGGGTGCCGTCTTCTCTGAGTTGCCATACAGATTTGCACTGCCAAGATCTCTGTCAGGTTTCCTGTTAGTATTCCATGGTGTCGTATGGTATGGAATATCTCTCTCTGGCCACTTTAGATTCTTTCCCCTCCCAGCTCCTCGTGCTGCCAGCCCATTTGCTGGTAGGACAGTATGAGAAGCTGAGAAGGCCAAATGTGTGTGCAGCACTGCTCAGCAACAAGTGAGACATCGCTGTGTTACCATCACTGGTTTTCTCCTAAAGCCGAAGCAATGTATCGTACCAGACACTAGGAAGAAAATCAGCTCTGCCCAACCTGAAACCCTCATGCTTGTCAGTAATTCTACCCAGTGCTGAGACGAAGGGAGCAGAGGGCTTGGATTTCCCTGCAGCTAGTGCCCACTTAGCATCTCGTGGGCTCCCCTCCAAGTGCAGCCCAGGTGAAAAATGAGGCACAAGCTGAATCCTGCAGCAGGGCAGATTGTTTTCCTGCGCTTCAGGGTGCTTTACACCTGTTGTAAGGGGTAATTCTGGGAGAACAGGTTTCTGTAGCAATCCTAGGTGGAGCAGGGATGGATTGTCAGATGAGCCTGAGGGCACTTTTCAGATCCTCCATAGAACTCCCTGCCTTTGCTCATAACTCCTCACGTGCAGCTTATTTGGAGATGAGGTTTTGATGGATGGGGACGGGGCTGTATGATGACAGCACATGCAGAAGACAGTGGATGCACCTGCAAAGATGCTGTCATGTCTCTGATGTTTGTCTTGTCCTTGAGCAG
Seq C2 exon
ACTGTGACCTAGCCAAGCCTGAAGATTTATTGCAGATGGAAAGAGGAGAGCCATGCGTGCCAGCAGAGCCAGACCTGGAGGGCACAGCGGTGTCCCTGAAGCCGGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019710:ENSGALT00000007819:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.737
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGGTGACTTTCAAGGATGT
R:
CACCCGGCTTCAGGGACA
Band lengths:
233-1206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]