HsaINT0186425 @ hg38
Intron Retention
Gene
ENSG00000122386 | ZNF205
Description
zinc finger protein 205 [Source:HGNC Symbol;Acc:HGNC:12996]
Coordinates
chr16:3116427-3119015:+
Coord C1 exon
chr16:3116427-3116547
Coord A exon
chr16:3116548-3118904
Coord C2 exon
chr16:3118905-3119015
Length
2357 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
3' ss Seq
CAGCATCTCTTTCTGGGCAGGCT
3' ss Score
6.48
Exon sequences
Seq C1 exon
ATGCCAGTGACTTTCGAGGATGTGGCCTTGTACCTCTCCCGGGAGGAGTGGGGACGGCTGGACCACACGCAGCAGAACTTCTACAGGGATGTCCTGCAGAAGAAAAATGGGCTGTCACTGG
Seq A exon
GTAAGCACTCGCCTGGAGGGGGGACTGGGGTGTTAGGGAGAGGTCCTGCTCTGCCGTCTCCTCTTTCCTCCCTTCCCTCCCTCTCTCTCCCACCCTTCTCCTTGTCCCTTGAGACAGCACTGTTCTATGGAAACTTCTGTAATGATGGAAATGTTCTGTGTGTGCTAGGACGGGAGCCACAAGCCATGTGTGGCTACTGAGCACTTGAAATGTGAGTAGAGCCCTTGAGTTTTTAATTTTACTTGGTTTTGTTTTGTTTTGTTTTGAGACGGAGTCTCGCTCTGTCACCCAGGCTGGAACACAGTGGCACGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCATGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGTGCCCACCACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGAACTCGTGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCAATTTTACTTGGTTTTAATCAGCTCAAATGAGAGTTTAAATAGCCGCATATGGCTAGCAGCTACTGTACTGGACGCTGCCCCAGGAAGTCCGCTTTTCCTGGGTTCATCCGCAGGGCTCACTCCTATAGCTCCATCTTCCTTTCCAAGCCCCAACTTCAGAGGTGTCTGAGCAGCAAGCTTGGCTTCGGGGCCCGAGGGCTGCTTGCCCTGGAGAGAGATGGCATGAACTGAACTCCCCAGGCCCCGCAGACCCTTGGGTGTCCCATCTGCTTTGAGGAGCAGGTGCTTGTCTCCGAGGGGTCTTGGTTCCCTTTGTTTCTTGGATGTTAAGTATTTAAGTCCCAGAGCTTTTTTTTTTTTTTTTTTTTTTTTGAAACACAGCCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCACCATCACGACTCATGCAGCCTCGACTTCCTGGGTTCAAGTGATCCTCCTGCCACAGCCTCCTGAGTAGCTGGGGCTACAGGTACCACCATGCCCAGCTATTTTTTTCTTTTTTTCTTTTTTTGGTAGAAATGGGATCTCGCTATGTTGCCCAGGTTGGTCTTGAGCTCCTGGGCTCAAGTCATCCTCCTGCTTTTGCCTCCCAAAGTGTTGGGATTATAGGCGTGAGCCACTGTGCCCAGCCATCCCAGAGCTTTTGACTCCTCAATTCCAGACTTTAGTTTTAATACGGAAAAATCAGTATTCATTTATTCATTTATTCATTCATTCAGTTGACGCTTAGCTTTTTTTTTTTTTTGAGACGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGTAGTGGCGTGATCTCAGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGTGATTCTGCTGCTTCAGCCTCCCAAATAGCTGGGGCTACAGGTGCCCACCACCATGCCCGGCTTTTTTTTTTTTTTTTTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATCTTGGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGAGGCATGAGCCACTGCGCCTGGCCAACACCCAGCTAGCACACTTGCTAGTCCAGGCAGAATCCAGGACTCAGCATTCCAGGTGGTGGCATCATGGTGGTCCCAAGGCCCCGCTGGCTGGCACCAGGGATGGTCACCCCTCAATTAGCTCAGGCTGCTCACCGCTCTTATGGTTCCCCAGTGCCTGGGCCAGCAAGCCCAGGCAAGTCCTGAGGGATCAGAAGGATCTCAACACCCATTTTCAGCACCACGGCAGGCCTCGCAGATGCCTCAAGCCACCCGGTTGGTCCAACACATTCCTTTCCTCCCACGGGTGGTGGAAGCCAGGGCCCCCTCTGCTCTCTTACTGACTTGACCAAAATTCCTGGGGCCACACCCCCCCAAGACTTGACAAATGGGATGACCTTAGTCGTTGGAGATCCTGGCCCTCCTGTCCCAGGTCCTCCCACTTGGAGGGCCACTACCCTTGCCCCTCCAGGTGTGGGTGTAGGAGCGGGATACCCGTCCCGTGGGCGTTGATGTAGGGTGTTGCCCACTCCCGTCCCTTAAACTCCGTTGCTCTTTCAGGGAAAGAGGAGACAGGCCTAGTCAGCTCTGGCAGCCGCCAGGCAGGGGGCGGACCCCCGACCCAGGGGGCCTTCTTGAAACTGCTTTATTTTACCCCCTGTTTCCAGAGCCTCACCCCCTACTTGGGCCCATCAGTTTTGGGGAGATGCTGTCTGCAGCTGGGCAGCGCCAGAAGGCCTGTGACAGCACAGCATCTCTTTCTGGGCAG
Seq C2 exon
GCTTTCCCTTCAGCAGGCCTTTCTGGGCCCCTCAAGCGCACGGCAAGGGTGAGGCCTCGGGCTCCAGCCGGCAGGCAGGAGATGAGAAGGAGTGGAGAGGCGCGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122386:ENST00000382192:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=NA C2=0.737
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(94.9=90.2)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains