RnoINT0167758 @ rn6
Intron Retention
Gene
ENSRNOG00000003455 | Zfp13
Description
zinc finger protein 13 [Source:RGD Symbol;Acc:1304577]
Coordinates
chr10:12908643-12912849:-
Coord C1 exon
chr10:12912729-12912849
Coord A exon
chr10:12909945-12912728
Coord C2 exon
chr10:12908643-12909944
Length
2784 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TCATTCTGTGAGCTCTCCAGAAG
3' ss Score
1.33
Exon sequences
Seq C1 exon
ATGCCGGTGACCTTTGAGGATGTGGCTCTGTACCTCTCCCGGGAGGAGTGGGGAAGACTGGACCACACACAGCAAAATTTCTACAGAGACATACTACAGGGCAAAAATGGGCTGGCTTTGG
Seq A exon
GTAAGGCTCATCTGCAATGGCTTCCTGTGTCCTCCAGAGTGTTGGAGGCTGCCCCGTCATTGCCTCCCTGCCCACACCTTACCTGCCCCTTTCTCTCTTGTTTATCTGGACAGCACTGCTCTGCAGAACCTTCCACACAGAGGGACATGTTTGCTTCTGTCCTAGGACAGTGACCACAAGCCAGGTGCCTGTTGAGTTCTAGAAAGAAGATATGGGGCTTAACTTTAAACTATGTTTGGTCAACTTAGATTGGAATTTGAATAGCCAGTGTTGGGTGCTGTGGTCACATCTGTAAGCCCAGCAGTAGGGGCAGAGGCAAAGGCTAGGGCACTAATGCTTACACAGGGAGCGCCAGGCCTGCCACAGCCAAGCAGTGAGGCTTTGTCTCAACGGAGATTTATAAAGGAAGAGGCAGCCGTGCAGGTTAGTAGCTGCAGCACTGCCCAGTGTCGGCTTGGAATGTTGTTCCTTCTTTCCCTGCATTCATATCACAGATTATTCACCTCAGCCTCCCAGCTCCAGATGTGTCTGCTCATCTGGAGGCTCCCTGGTCAGATGCGCCATCAGCCGCCCTCCCAGATCCTTGAGGCACTGCAGCTGCTTCCAAGAACCCACAGGACAAGCTTGCTCTCCAGGGTGGGAAGGGCCGTGTCGAAGTCCAAGCTTTTGACCCCTCAGTTTCAAACTGATCTTGACAGAATTTGATGATGCCTTCAGCTGTCCATTGTTATCCACCCACCCATCCATCCATCTATCTGTCCATCCAGCCATCCGTCTATCTGTCCATCCATCCCTCTATCTGTCCATCCATCTTATCTATCCATCTGTCCATCCGTCCATCTGTCTTTCTGTCCATGCATCCATCCACTCATCCATCCGTCCATCCACCCATCCATCCATCTATCTGTCCATCCATCCGTCTATCCATCCATCTATCCATCCATCCACTCGTCTATATGTCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATTATTTAAATTTACTAGTTAAGGTGGAATCCCTGAGCCTAAGCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATATTGAGAGAATGCACCAGATGTCAGCCTTGAGTCATGGCTCTCTAAGAGCTGTCCATGTTTTTTGGTTGGTGGTGAATTGTTTTTGTTTTGATTTTTGATTTTTTTGAGACAGGATTGTGGCCCTGGCTATCCTGGAACTCACTTTGTAGACCAGGCTTCAAGCTGCCCCTGCTTCCCAATGCTGGGATTAAAGTTGTGCCAGGTCATTTCGTTTTGCTTGTTTGGTTGGTTTCTGAGACAGGGTCCTTCATTGGTCAGGAGCTCAGCTGTCTGCGCTCGATAGCTGTTGAGCTCCAGGTCCCCACACACCCATCGTTAGGACTACAGACATTGCCATTGTTTTTAATGTGGTTGCTAAGGATGGAGCTTAGAGCCTCACAGTGCTTTGTTGACAGGCACTTGAATGACTGTTCTCTTTCCAGCCCCGTGACCATGCCAGTTCTGTTAGTGACGGGTGTGGTGGTCCTGAGACCACCCATACTAGGCACACCAGTACCACATCCAGTACCCCACTCCTGTAATTTCCTTAGGTTTGCTTACCAGCCATTGCTAGCATTTGCCAGGGCTCAAACCAACAAGTCCAAGCAAATCCTGGAGATTAGAGGGAATTTAGCACTCAACTGGGTCATGACCTAGCAAATTCCTTTCCTTCCTTGAGGCATGGGAGCCATAGCTCTCTGCTCTTACTGACCACACAGAACTCCTCAAGGACACAGCACATGAGTCCTGTGGTTGTCAGTGTCCCAGTCTCTCTGCCTAAGAACTGATTCCCCCAAATGCAAGTGCAGGAGTAAGGTGGTTCTCTGTGGTTCTTACTGTTGGGCCCACCGACTGTCCGCCATGATGAGGCTCCTGCTGAGCCCAGCAGTCTCTGCTCCTCACTCTTGAGTTCTGTTATTTGCTCAGGGGAACAGAGATAGGGCCAAACACTGGGAGAGGATGCACTGTCAACACAGGAACTTGTTTATTTTACTTTACTTTTATGTGGTGCTAGGGGATGGGACTCAGGGCCTCTCACATATAGCCCATGTAGCTCAGGCTAGCCTTAAACTCCTGATCTTCCTTCCTCCACCTCCTAAGTGGAATACCAAAATTATGCCACCAAGCCTGGAATCGTTTGAAGTTTGAGTACTAATCTGTTGAGATAGTATCACTATGTGTTAGGCGGGGCTTGAGCTCAGCCTCCCTGGTTTTGCCTTAGGTTTCTAGGTGAAGGGTTCCCCCCCTTTTGCCTTACAGCGTTGAGTCAGGGTAGAGATGGATCACAATGGGTGGAGTCCAATTGGGGGATGACCCTACTGCTGGGCAGTCCCAGAAGTTCAGCTTTTCTTTCTGGACAGGGTTTCCCTTCAGCAGACCTTTCTGGGTCCCCCAAGTTGAGGGGAAGGGCCAGGCGTCAAGCTCCAGCAGGATCACAGGAGCTGAGGAGAGGAGAGACCTTGGTTCAGGTGAGGGCCTTAGCCAATGTTAAGGTTTGGGGATCCCCTTATGGATATGCATGCAAGGGTCTCCAGACCCCTCTACTGCTAGAGGGTGGCTATTGCCTTGAGGGTCCCCTAGTTTCCCCTTGCCTGTTCCTGTCTCCAAGAATCTAGCTCCTGGTCTTTTTTTTTTAAGCTCTGCCCTCTCATTCTGTGAGCTCTCCAG
Seq C2 exon
AAGTTTATCTTCAGCGGCAGCCTTTTTTTTTTTTTTTTTACAGGAGCTATGGAAATGGGGAAAATGGTGCCAACCCTGGCGGTTGCCACCCTAGAGGACACAAAACCCATAAGGACTAGGGCCAGATGGGCCCCGGGGGAAGACCCGAAGTATGGTCAACAAGTGGCTAGTGGTCCGGCTACAGAGTTGGCCAGAGACACCGGGGAAGCTAGTCAGCTAAAACCAGCCCCATCTGAAGCACATCCTCTCAAGACCCCAGAGTACAGAGGCCCAGAGAAACCCAGTGAGCGGGAGGAGGCCCTGACAAGTGGCGAAGAGAGTCTGGTACCCGACAGCGACACTGGCAAGAAGACATACAAGTGCGAACAGTGCGGCAAGGGCTTCAGTTGGCACTCGCACCTGGTGACACACCGGCGCACGCACACGGGCGAGAAGCCTTATACCTGCACGGACTGCGGCAAGCGCTTCGGCCGAAGCTCACACCTCATCCAGCACCAGATCATCCACACGGGCGAGAAGCCCTATACCTGCCCCTCGTGTTGGAAGAGCTTCAGCCACCACTCCACGTTGATCCAGCACCAGCGCATCCACACCGGTGAGAAGCCCTACGTGTGCGACCGCTGTGCCAAGCGCTTCACCCGCCGCTCGGACCTAGTCACACACCAGGGCACTCACACCGGCGCCAAGCCCCACAAGTGCCCCATTTGCGGCAAGTGCTTCACCCAGAGCTCTGCCCTGGTCACGCATCAGCGCACCCACACTGGCGTCAAGCCCTACCCGTGCCCGGAGTGCGGCAAGTGCTTCAGCCAGCGCTCCAATCTCATCGCACATAATCGCACGCACACGGGCGAGAAGCCCTACCACTGCCTCGACTGTGGCAAGAGCTTCAGCCACAGCTCGCATCTCACTGCTCACCAACGCACCCACCGTGGCGTGCGACCCTACTCCTGCCCACTCTGCGGCAAGAGCTTCAGCCGCCGCTCCAATCTGCACCGGCACGAGAAGATCCACACCACTGGACCCAAGGCTCTGGCCATGCTCATGCTGGGGGCAGCGGCGGCGGGAGCACTTACAGCCCCTCCACCTGCTCCTACTTAAAAGCCTGAGAAAGAGCAGTGAGAACACCCAGGGAAGCTGGGACAGCCCCGCCGATGCCTAGGGCCCTGGGAAGACGCTGGGCCCTAGCGAGTGGGATGATAGACTAGGAGGTGCTACTTCTGGCACCAGGTGGGCATGGTAACGTGGGAGGAGCCAGGGCTAGAAGGGCGGGCACTCTAGCTGCAGATTAAAGGCCTGGATTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003455:ENSRNOT00000004589:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.088 A=NA C2=0.332
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]