HsaINT0186426 @ hg19
Intron Retention
Gene
ENSG00000122386 | ZNF205
Description
zinc finger protein 205 [Source:HGNC Symbol;Acc:12996]
Coordinates
chr16:3168906-3170518:+
Coord C1 exon
chr16:3168906-3169016
Coord A exon
chr16:3169017-3169256
Coord C2 exon
chr16:3169257-3170518
Length
240 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
AAACGACTTTCTTTTTCCAGGAG
3' ss Score
9.08
Exon sequences
Seq C1 exon
GCTTTCCCTTCAGCAGGCCTTTCTGGGCCCCTCAAGCGCACGGCAAGGGTGAGGCCTCGGGCTCCAGCCGGCAGGCAGGAGATGAGAAGGAGTGGAGAGGCGCGTGCACAG
Seq A exon
GTGAGGGACGGGCGCGCGCCTTTGTCTGCGGGAGTGGGGCGCAGACGCAGGCCTTCTGGCTGTTGTCTGTGGGAGTGGGGCAGGGCCACCAGACCCCCTCCTGGGCGGTTTGCGCCCAGGGCGGCCCTTGCGCTTTCTGGTCTCTGAGAATCCAGCCCCCACCCTTAGCTCTGCCTTCTCCACCCTCCTGGGGTCCTTAGGGAAGCTCGTCCCTAGCTGGAAACGACTTTCTTTTTCCAG
Seq C2 exon
GAGCCGTCGAGGTGGGGCAGAGGGTGCAGACCTCATCCGTGGCAGCCCTTGGGAATGTGAAGCCCTTCAGAACCAGGGCAGGGAGAGTCCAGTGGGGCGTCCCGCAGTGCGCGCAGGAAGCAGCCTGCGGCCGGAGCTCAGGGCCGGCCAAAGACTCCGGGCAGCCGGCTGAGCCAGATCGCACCCCGGATGCAGCTCCGCCAGACCCCAGTCCCACGGAGCCCCAGGAGTACCGCGTCCCGGAGAAGCCCAACGAGGAGGAGAAGGGCGCCCCGGAGAGTGGCGAGGAGGGCCTGGCCCCTGACAGTGAGGTGGGCAGGAAGAGCTACCGGTGCGAGCAGTGCGGCAAGGGCTTCAGCTGGCACTCGCACCTGGTGACGCACCGGCGCACGCACACGGGCGAGAAGCCCTACGCCTGCACTGACTGCGGGAAGCGCTTCGGCCGCAGCTCGCACCTCATCCAGCACCAGATCATCCACACGGGCGAGAAGCCCTACACCTGCCCCGCCTGCCGGAAGAGCTTCAGCCACCACTCCACGCTGATTCAGCACCAGCGCATCCACACCGGAGAGAAGCCCTACGTGTGCGACCGCTGCGCCAAGCGCTTCACCCGCCGCTCGGACTTGGTCACCCACCAGGGCACCCACACGGGCGCCAAGCCGCACAAGTGCCCCATCTGCGCCAAGTGCTTCACGCAGAGCTCGGCGCTAGTCACCCACCAGCGCACCCACACTGGGGTCAAGCCCTATCCGTGCCCCGAGTGCGGCAAGTGCTTCAGCCAGCGTTCCAACCTCATCGCGCACAACCGCACACACACAGGCGAGAAGCCCTACCACTGCCTCGACTGCGGCAAGAGCTTCAGCCACAGCTCGCACCTCACCGCGCACCAGCGCACCCACCGTGGCGTGCGGCCCTACGCCTGCCCGTTGTGCGGCAAGAGCTTCAGCCGGCGCTCCAACCTGCACCGGCACGAGAAGATCCACACCACCGGGCCCAAGGCCCTGGCCATGCTGATGCTGGGGGCGGCGGCGGCGGGGGCTCTGGCCACACCCCCACCCGCTCCCACCTAGGAGGCCAGGAAAGGGGGAGCGGGGCGCCCAGGGCCACTGGAACAGCCCCACTGGAGTCAAGGCTCCGAGGGAGGAGAGAGGGGCTCGGGAAGGGAGCTGGGGCGGTGAGGGCATGGGGTGAGGCATGGCGATGGGGGAGGGCGAGGGCGAGAAAGGGCAGGCACTCTGCGAATTAAAGGCCTTGGACTTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122386-ZNF205:NM_001042428:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.737 A=NA C2=0.406
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGAAGGAGTGGAGAGGCG
R:
TTCTCCTCCTCGTTGGGCTTC
Band lengths:
295-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)