BtaINT0165031 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005572 | ZNF205
Description
Bos taurus zinc finger protein 205 (ZNF205), mRNA. [Source:RefSeq mRNA;Acc:NM_001034473]
Coordinates
chr25:2563713-2565296:+
Coord C1 exon
chr25:2563713-2563814
Coord A exon
chr25:2563815-2564073
Coord C2 exon
chr25:2564074-2565296
Length
259 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
3' ss Seq
TGGAAACCCTGTTTATCCAGGAG
3' ss Score
4.48
Exon sequences
Seq C1 exon
GGTTTCCCTTCAGCAGACCTTTCTGGGCCTCTCAAGTGCAGGGCAAGGGTGAGGCCCCGGGCTCCAGCAGGCAGTTGGGACATGAGGAGGAGGAGAAAAGAG
Seq A exon
GTGCGTGCAGAGGGGACAGGTGGGCGGGGTAGTGGGGTCTTGGTTGTCACTCTTTGATGCCCCAGGTCAGCACGGGCTGTTTCTTGTGGGGTGCAGACACAGAGCCCCTCCTGGGGCCGGGCCACCCACCCCCGCTCCTGTGTGGAGGTGGCTCTTGCTTCCAGGGTGCCCCGCAGGTGCTTGCCCTCATCTCCATCTCCAGAACTCCCCTGGGGCCCTCATGAAAGCCTCTCTCTTGCTGGAAACCCTGTTTATCCAG
Seq C2 exon
GAGTGGTGGAGGTGGACAAGGAGGAGCTGGCTGCATCCCTGGGAGCCCTTGGCGATGCAAAGTCCTTCAAAAGCAGAATGGGAAGAGCCCAGGGGGAGGCCCCGCGGTGCGGGCAGCGAGCAGCCAGCGGCCAGAACTCAGGGCCAGCCAAGGACGATGTGCAGCCCTGTCCCGTGAAGGAGGCACAGCTGGAATCAGCCCCGCCTGACACCGACCTCCCGAAAACCCAGGAGGGCCACTTCCCGGAGCAACCCAGAGAAGGGGGGACGGCCGCCCCCGAGAGCAGCGAGGAGGGCCTGGCGCTGGACAGCGAGGCGGGCAAGAAGACCTTCAAGTGCGAGCAGTGCGGCAAGGCCTTCAGCTGGCACTCGCACCTGGTGACGCACCGGCGCACGCACACGGGCGAGAAGCCCTACGCCTGCACGGACTGCGGCAAGCGCTTCGGCCGCAGCTCGCACCTCATCCAGCACCAGATCATCCACACGGGCGAGAAGCCCTACACCTGCCCATCCTGCTGGAAGAGCTTCAGCCACCACTCGACGCTGATCCAGCACCAGCGCATCCACACGGGCGAGAAGCCCTATGTGTGCGACCGCTGTGCCAAGCGCTTCACCCGCCGCTCGGACCTGGTCACCCACCAGGGCACCCACACGGGCGCCAAGCCGCACAAGTGCCCCATCTGTGGCAAGTGCTTCACGCAGAGCTCGGCCCTGGTCACCCACCAGCGCACCCACACCGGGGTCAAGCCCTACCCGTGCCCCGAGTGCGGTAAGTGCTTCAGCCAGCGATCCAACCTCATTGCGCACAACCGCACACACACCGGCGAGAAGCCCTACCACTGCCTCGACTGCGGCAAGAGCTTCAGCCACAGCTCGCACCTCACCGCCCACCAGCGCACCCACCGAGGCGTCCGGCCCTACTCCTGCCCGCTGTGCGGCAAGAGCTTTAGCCGGCGTTCCAACCTGCATCGGCACGAGAAGATCCACACGGCGGGGCCCAAGGCCCTGGCCATGCTGATGCTGGGGGCGGCCGGGACTCTGGCAGCACCCCCGCCTGCCCCTACCTAGGAGGCTGGGAGGGAGGGGCCGGGGCATCTGGTGTGGGAGTGTGACCTGGGAGACCCAGGAAGGGAGGCGGGGAGGTGCTGGCATGGGGGTGGCAACACAGGAGGAGCTCAGATGAGGACCAGGCATGCTCGCCGCAAATTAAAGGCCTTGGAATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005572:ENSBTAT00000007323:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=NA C2=0.375
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTCCCTTCAGCAGACCTT
R:
GATTCCAGCTGTGCCTCCTTC
Band lengths:
298-557
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]