MmuINT1035479 @ mm10
Intron Retention
Gene
ENSMUSG00000062012 | Zfp13
Description
zinc finger protein 13 [Source:MGI Symbol;Acc:MGI:99159]
Coordinates
chr17:23575852-23580232:-
Coord C1 exon
chr17:23580112-23580232
Coord A exon
chr17:23577112-23580111
Coord C2 exon
chr17:23575852-23577111
Length
3000 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
AGCAGCCTACCTTTTTACAGGAG
3' ss Score
6.36
Exon sequences
Seq C1 exon
ATGCCGGTGACCTTTGAGGATGTGGCCCTGTATCTCTCCCAGGAGGAGTGGGGAAGGCTGGACCACACACAGCAAAATTTCTACAGAGATGTACTACAGGGGAAAAACGGGCTGGCTTTGG
Seq A exon
GTAAGGCTCATCTGCAGTGGCTTCCTGTGGCCCCCCGGAGTGTTGAAGGCTGCCCTGTCATTGCCTCCCTTGCCTGCACCTTACTTGCCCTTTCCTCTCTTCTTGATCTGGACAGCACTGCCCTGCAGAACCTTCCACATAGATGGGCATGTTTGCTTCTGTCCTAGGACAGTGACCACAAGCCAAGTGCCTGTTGAGTCCTAGAAGGAAGAGAGGAGGAGTTAACTTTAAATTTTGTTTGATCAACTTAGGTTGGAATTTGAACAGATAGTGTTGGGTGCTGGGGTCACATCTGTAAGCCCAGCAGTAGGGGGTGGAGGCAAAGGCTGGAGCTGTGGTCACATCTGTAAGCCCAGCAGTAGGGGGTGGAAGCAAAGGCTCTAGGACTAATGTTTACACAGGAGTTCCAGGCCTGCCAGAGCAATAGTGAGACCTTGTCTCAGAATAGTTAGGAGAAGAGGCAGCTGTGCAGGTTAGTGGCCGAAGCACCGCCTAGTGTTGTCTTGGAATTTTGTTTCTTCTTTTCCTACATTCATATCACCAGCTGTTCTCCTCAGCCTCCCAGCCCCGGATGTTATCTGCTCATCTGGAGGCTCCCTGGTCAAATGTGCCATCAGCCACTCTCCCAGATCCTTGAGCAGCATCTTCAAAGAACTTACAGGACAAGCTTGCTCCCCCAGTGTGGGAAGGGCAGTGTCTAAGTCCAGGCTTTTGACTCCTCAGTTTCAAACTGATTCTGACAGAATTTGATGATGCCTTCAGCTCTTCATTGTCATCTATCTGTCTGTCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCATGTAGCTATAGCTATTTCAAATTTGCTAGTTAAGGTGGAATCCCTGAGCCTAGGCAGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACTAACCAGAGGTCAGCTTTGAGTCTTGACTCTTCAAGTGTTTTCCATGTTTTCTTGGTGGTGGTGAGTTGTTTTTGTATTGTTTTTTTTTTTTGTTTTGTTTTTTGTTTTGTTTTTTTGTTTTTGTTTTTTGGTGTTTTGGTTTTTTTCGTGACAGGAGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCGGGCTGGCCTCAAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCTTGTGCCACCACTGCCTGGCTTTGATTTTTGATTTTTTTTGAGACAGGATTTCTATGTAGCCTTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTTCAGGCTGCCTCTGCTTCTCAATGTTGGGATTAAAGTTACTTCGTTTTGTTTGTTTGTTTGTTTGGTTTTTGACACGAGGTCTTTCATTGGTCAGGAACTCACCAAGTTGTCTAGGCTTGATAGCCATGGAGCTCCAAGGTCTCCATATACCACCCATCATTAGGACTACAAACATTGCCACTGTGTCTGGCTTGTACTGTGGTTGCTAAGGATGGAACTTAGATCTTCACACCTTCTTTGTTGGCAGGCACTTGACTGACTGAACGGTCTTTCCAGCCACGCTGCCTTGGCAGTTCTGTCAGTGGTGGTCCTGAGACATCAGTCCCCCACCCACTCCTGTAATTGTCTTAGGTTTGCTTACCAGCCGCTGTTAGCATTTGCCAGTGCTCAAACCAACAATCGACCTAGCAAATTCCTTTCTTCCCTTGAGGCATGGGAATCACAGGTCTCCGCTCTTACCAACTATAGGAAACCTCTCAGGGACACAGCACATCAGTCCTATGGTTGTCAGTATCCCAGCCTCTCTGCCTGAGACCTGATTCTCCTAAATGCAAGTGCAGGAGTAAGGTGGACTTCTATGGTTTGTTCTTCTGTGCCCACTGCTTGTCCACCATGATGAGGAAAGCTGAGAGCCGAGCTGAGCCATCTCTGCTCCTCCCTCGTGAGTTCAGTTACTTGCTCAGGGACACAGAGGTAGGGCCAGCCAAGCTCTGGGAGAGGACGGACTGTCACCAAAGAGACTTGTTTGACTTTCCTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCATTCTGTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGAGATTAAAGGCGTGCACCACCACACCCGGCTGTTGACTTTACTTTTAGAGACGGGACTTGGGGCCTCTCACATATTTACCTAATTTTTTTTTCTTTTGAGAACAGGGTCTCATGTAGCCCAGGCTAGTCTTGAACTCATTTTATAGCTTTGGATGACCTTAAACTCCTAAATGGAATTCCACAATTATGCCACAATTATGGAATTTTAAAAATTTTGCCTCCTAATCTATTGAGAGAGTCTCACTGTGTAGTCTAGGCAGGGCTTGGGCTCAGTAACCTCCCAGCCTCCAGGGTGCTGGCTTGTTTCTGCGTTAGATTTCTAGGGCTAAGGGTTTCCCCCTTTTGCCTTAGAGAGTTGAGTAGGGGCAGAGATGGACCGTACTGGGTGGAGTCTGCGGGGCAGTCCCAGAAGCTCAGCCTCTCTTTCTGGACAGGGTTTCCCTTCAGCAGACCTTTCTGGGTCCCCCAAATTCAGGGGAAGGGCCAGGTGGCAAGCAGGATCACAGGAGCTGAGGAGAGGAGAGGTCTTGGTTCAGGTGAGGGAGGGCCTTAGCCAAAGCTACGGTTTGGGGATCCCCTTGTGGATGCATGCAAGGGTCCCCAGGCCCCTCTACTGACAGAGGGTGACTATTGCCTTGAGGGATCCCCTAGTTTCCCCTTGCCTGTTCCTGTCTCCCAGAATCTAGCTCCTGGGTTTGTTTGTTTGTTTGCTTGTTTGTGTTTTTAGCTCTGCCCTCTCCAGAAGTTTATCGTCAGCTAGCAGCCTACCTTTTTACAG
Seq C2 exon
GAGCCGTGGAAATGGGGAAGGTGGTTCCAGCCTTGGCCGTCGCAACCCTAGAGGACACAAAATCGATAAGGACTAGGGCCAGGTGGGCCCCGGGGGAAGACCCAAAGTGTGGTCAGCACGTGGCTAGTGGCCCAGGTACAAAGCTGACCAGAGACACTGGGAAAGCTGGTCAGCTAAAGCCAGCCCCATCTGAATCACGTCCTCTCAAGACCCCAGAGGACAGCGGCCCAGAGAAACCCAGTGAGGGGGAGGAGGCTCTGAAAAGTGGCGAAGAGGGTCTGGTACCCGACGGTGACACGGGCAAGAAGACATACAAGTGCGAGCAGTGTGGCAAGGGCTTCAGTTGGCACTCGCACCTGGTGACACACCGGCGTACGCACACGGGCGAGAAGCCTTATACCTGCACGGACTGTGGCAAGCGCTTCGGCCGCAGCTCACACCTCATCCAGCACCAGATCATCCACACGGGCGAGAAGCCCTATACCTGCCCCTCGTGTTGGAAGAGCTTCAGCCACCACTCCACGCTGATCCAGCACCAGCGCATCCACACTGGTGAGAAGCCCTACGTGTGCGACCGCTGTGCCAAGCGCTTCACCCGTCGCTCGGACCTAGTCACACACCAGGGCACTCACACCGGCGCCAAGCCCCACAAGTGCCCCATCTGCAGCAAGTGCTTCACCCAGAGCTCCGCCCTGGTCACGCACCAGCGCACCCACACCGGCGTCAAGCCCTACCCGTGCCCGGAGTGCGGCAAGTGCTTCAGCCAGCGCTCCAATCTCATCGCACATAATCGCACCCACACGGGCGAGAAGCCCTACCACTGCCTCGACTGTGGCAAGAGCTTCAGCCACAGCTCGCACCTCACTGCCCACCAACGCACTCACCGTGGCGTGAGGCCCTACTCCTGCCCACTTTGCGGCAAGAGCTTCAGCCGCCGCTCCAACCTGCACCGGCACGAGAAGATCCACACCACTGGACCCAAGGCTCTGGCCATGCTCATGCTGGGGGCGGCAGCTGCGGGGGCGCTCACGGCACCACCACCTGCTTCCACTTAGAAGCCTGAGAGAGAGCAGTGAGAACACCCAGGGAAGCTGGGACAACCCCGCTGATGCTAGGGCCCTGGGAAGACGCTGGGTCTTAGCCAGTGGGATGATGGAGTGGGGTGAGGACTGGGAGGTGGCACAGGTGGGCATGGTAACGTGGGAGGAGCCAGGGCTAGAAGGGCAGGCACTCTAGCTGCAGATTAAAGGCCTGGATTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062012:ENSMUST00000057029:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.211 A=NA C2=0.344
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=92.7)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types