Special

MmuALTA0020500-2/2 @ mm10

Alternative 3'ss

Gene
ENSMUSG00000062012 | Zfp13
Description
zinc finger protein 13 [Source:MGI Symbol;Acc:MGI:99159]
Coordinates
chr17:23577011-23580232:-
Coord C1 exon
chr17:23580112-23580232
Coord A exon
chr17:23577112-23577162
Coord C2 exon
chr17:23577011-23577111
Length
51 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TTGCTTGTTTGTGTTTTTAGCTC
3' ss Score
8.69
Exon sequences
Seq C1 exon
ATGCCGGTGACCTTTGAGGATGTGGCCCTGTATCTCTCCCAGGAGGAGTGGGGAAGGCTGGACCACACACAGCAAAATTTCTACAGAGATGTACTACAGGGGAAAAACGGGCTGGCTTTGG
Seq A exon
CTCTGCCCTCTCCAGAAGTTTATCGTCAGCTAGCAGCCTACCTTTTTACAG
Seq C2 exon
GAGCCGTGGAAATGGGGAAGGTGGTTCCAGCCTTGGCCGTCGCAACCCTAGAGGACACAAAATCGATAAGGACTAGGGCCAGGTGGGCCCCGGGGGAAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062012-11-16,11-15-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (No Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.211 A=NA C2=0.343
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0135222=KRAB=WD(100=92.7)

							
A:
NA

							
C2:
PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000111178





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000054595
  



Associated events







Other assemblies


mm9




Conservation


Human
(hg38)
chr16:3119182-3119183 
Human
(hg19)
chr16:3169183-3169184 
Rat
(rn6)
chr10:12909975-12909976 
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
chr2:354438-354439 
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
chr22:2206895-2206896 
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CGGTGACCTTTGAGGATGTGG

				
R: 
GGAACCACCTTCCCCATTTCC

				
Band lengths: 
145-196

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





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