MmuALTA0020500-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000062012 | Zfp13
Description
zinc finger protein 13 [Source:MGI Symbol;Acc:MGI:99159]
Coordinates
chr17:23713978-23717199:-
Coord C1 exon
chr17:23717079-23717199
Coord A exon
chr17:23714079-23714129
Coord C2 exon
chr17:23713978-23714078
Length
51 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TTGCTTGTTTGTGTTTTTAGCTC
3' ss Score
8.69
Exon sequences
Seq C1 exon
ATGCCGGTGACCTTTGAGGATGTGGCCCTGTATCTCTCCCAGGAGGAGTGGGGAAGGCTGGACCACACACAGCAAAATTTCTACAGAGATGTACTACAGGGGAAAAACGGGCTGGCTTTGG
Seq A exon
CTCTGCCCTCTCCAGAAGTTTATCGTCAGCTAGCAGCCTACCTTTTTACAG
Seq C2 exon
GAGCCGTGGAAATGGGGAAGGTGGTTCCAGCCTTGGCCGTCGCAACCCTAGAGGACACAAAATCGATAAGGACTAGGGCCAGGTGGGCCCCGGGGGAAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062012-7-12,7-11-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.211 A=NA C2=0.343
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=92.7)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGACCTTTGAGGATGTGG
R:
GGAACCACCTTCCCCATTTCC
Band lengths:
145-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: