Special

MmuALTA0020500-1/2 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000062012 | Zfp13
Description
zinc finger protein 13 [Source:MGI Symbol;Acc:MGI:99159]
Coordinates
chr17:23713978-23717199:-
Coord C1 exon
chr17:23717079-23717199
Coord A exon
NA
Coord C2 exon
chr17:23713978-23714078
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
AGCAGCCTACCTTTTTACAGGAG
3' ss Score
6.36
Exon sequences
Seq C1 exon
ATGCCGGTGACCTTTGAGGATGTGGCCCTGTATCTCTCCCAGGAGGAGTGGGGAAGGCTGGACCACACACAGCAAAATTTCTACAGAGATGTACTACAGGGGAAAAACGGGCTGGCTTTGG
Seq A exon
NA
Seq C2 exon
GAGCCGTGGAAATGGGGAAGGTGGTTCCAGCCTTGGCCGTCGCAACCCTAGAGGACACAAAATCGATAAGGACTAGGGCCAGGTGGGCCCCGGGGGAAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062012-7-12,7-11-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.211 A=NA C2=0.343
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0135222=KRAB=WD(100=92.7)

							
A:
NA

							
C2:
PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000111178





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000054595, ENSMUSP00000111178f5222A
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr16:3169255-3169256 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr25:2564072-2564073 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CGGTGACCTTTGAGGATGTGG

				
R: 
GGAACCACCTTCCCCATTTCC

				
Band lengths: 
145-196

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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