BtaINT0165030 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005572 | ZNF205
Description
Bos taurus zinc finger protein 205 (ZNF205), mRNA. [Source:RefSeq mRNA;Acc:NM_001034473]
Coordinates
chr25:2562184-2563814:+
Coord C1 exon
chr25:2562184-2562304
Coord A exon
chr25:2562305-2563712
Coord C2 exon
chr25:2563713-2563814
Length
1408 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CAGCATCTCTTTCCAAGCAGGGT
3' ss Score
5.59
Exon sequences
Seq C1 exon
ATGCCGGTGACCTTTGAGGACATGGCTCTGTACCTCTCCCGGGAGGAATGGGGGCGGCTGGACCACACCCAGCAGAGCTTCTACAGGGAGGTCCTGCAGAAGAGGAGCGGGCTCTCCTTGG
Seq A exon
GTAAGGGCTGGGGAATCAGAGCGGGGCCCGTCCACTGCCACCTCCTCTCCCATTTCCAGGGCTTGAATCCCCTCTTGCAGTTCATCCGGACCCCGCTGTCCTATAGAACCTTCCTAGTGGTAGACGTGTTCTTTCTGTGCTGATGTGGTAGCCACAAGCCAGATGTAGCTAGTGAGTCTTTGAAATGCAGCTGGAGCCACTGAGCTCTTTTATCTCATTTTAATCAGCTCAGATTTGAGTTGAAGTAGCCACGCATGGCCAGCAGCTGCCATGCTGGACAATGCCCATCTAGAGACTGTGCTCTAGTTCTTCCCTAGCTCCTTCCAGCAGCTCCCCTTCTTCTCCCCTCCAAGCCCAGCTTCAGAGGTGTCTGAGCAGAAAGCTTGGCTCCGGGCCAGGCTGCAGGCCCAGGGGACAGGTAACGGTGCCAGCTGGTCCCTCCGGGCCTTTGACTCTGAGCTGTTACATCCCCCTCCCAGGGCCATGTCCTCTTCTCAGAGGGGCCTTGGTTCCCTTGGTTTTTCTCATGGTGAGTATTTAAGTCCCAGGGTTTTGACTCCTCAGTTTTAGGCTCTAGTTTTCATGACAGAATTTTGTGAGGGTTTATGGAAAAATCAGAGCGTTCATTTGGTCAGTCAGTCTGTCTGCGTGTCTGTTATACACCGCCTAGTCCCGGTGGAGCCACAGACTGGGTGATTCCACCTTCTGACTTTGGTGGTGGGCCTCAGGATCACAGCAGTGGCTCTGCTCACGCCTGTAATCATCTCAGGTTTGCTCGGCACCCAGTGTTGGGACTCTCTGGGGCCTCAGCCAGCAGGTCCAGGGAGATCAGATAGAACCAACCTCCACTCGCAGCCCCATGGTGGGCCTCATGAATGCCCTAAACCACCCATTGGTCCACACATTCCTTCCCTCCCATGGGGCTTGGATCAGGTCATGAAGCCCGGGCCCCCTCTGCTGTCTTCCTGGCTTGACCAGAATTCCTAGGCCCTCAAACCTGGGGGACTTGGCAAATGGGCCTGGTCCCTGACTTACGGGTGGTCGGTGTCCCTGGCCCTCTCAGCCAGGCCCTCCCGCTGGCCTCTCTCTGCCCACTGCCCCTGTCCCAGGAGCCCTCTTTGTGGTCCTGGGAAGGTGCAGGTGCAGGAGAGGAAGATGCATCTGGATGCTGACTGAGGGGGCCACTGCTGGGGGCTGTGTGACACAGGGGTGGCCAGCCCTGAGAAGAGTGTCCGGACGATGCCTGGGAAACTGTGTCCTGAGAGGGTGTGGCCATCTGGATTTGCCCTGTGTTTGCAGAGCTGCACCCCCTCTTTCGCTCCATCACCTCTCCAGGGGGTGGGTGCTGGTATCTCCCACTGTGCAGCCCGAAGGGCCCTGACTGAGCGCAGCATCTCTTTCCAAGCAG
Seq C2 exon
GGTTTCCCTTCAGCAGACCTTTCTGGGCCTCTCAAGTGCAGGGCAAGGGTGAGGCCCCGGGCTCCAGCAGGCAGTTGGGACATGAGGAGGAGGAGAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005572:ENSBTAT00000007323:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.714
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.1)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCGGTGACCTTTGAGGA
R:
TCTTTTCTCCTCCTCCTCATGTCC
Band lengths:
222-1630
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]