HsaINT0186425 @ hg19
Intron Retention
Gene
ENSG00000122386 | ZNF205
Description
zinc finger protein 205 [Source:HGNC Symbol;Acc:12996]
Coordinates
chr16:3166428-3169016:+
Coord C1 exon
chr16:3166428-3166548
Coord A exon
chr16:3166549-3168905
Coord C2 exon
chr16:3168906-3169016
Length
2357 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
3' ss Seq
CAGCATCTCTTTCTGGGCAGGCT
3' ss Score
6.48
Exon sequences
Seq C1 exon
ATGCCAGTGACTTTCGAGGATGTGGCCTTGTACCTCTCCCGGGAGGAGTGGGGACGGCTGGACCACACGCAGCAGAACTTCTACAGGGATGTCCTGCAGAAGAAAAATGGGCTGTCACTGG
Seq A exon
GTAAGCACTCGCCTGGAGGGGGGACTGGGGTGTTAGGGAGAGGTCCTGCTCTGCCGTCTCCTCTTTCCTCCCTTCCCTCCCTCTCTCTCCCACCCTTCTCCTTGTCCCTTGAGACAGCACTGTTCTATGGAAACTTCTGTAATGATGGAAATGTTCTGTGTGTGCTAGGACGGGAGCCACAAGCCATGTGTGGCTACTGAGCACTTGAAATGTGAGTAGAGCCCTTGAGTTTTTAATTTTACTTGGTTTTGTTTTGTTTTGTTTTGAGACGGAGTCTCGCTCTGTCACCCAGGCTGGAACACAGTGGCACGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCATGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGTGCCCACCACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGAACTCGTGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCAATTTTACTTGGTTTTAATCAGCTCAAATGAGAGTTTAAATAGCCGCATATGGCTAGCAGCTACTGTACTGGACGCTGCCCCAGGAAGTCCGCTTTTCCTGGGTTCATCCGCAGGGCTCACTCCTATAGCTCCATCTTCCTTTCCAAGCCCCAACTTCAGAGGTGTCTGAGCAGCAAGCTTGGCTTCGGGGCCCGAGGGCTGCTTGCCCTGGAGAGAGATGGCATGAACTGAACTCCCCAGGCCCCGCAGACCCTTGGGTGTCCCATCTGCTTTGAGGAGCAGGTGCTTGTCTCCGAGGGGTCTTGGTTCCCTTTGTTTCTTGGATGTTAAGTATTTAAGTCCCAGAGCTTTTTTTTTTTTTTTTTTTTTTTTGAAACACAGCCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCACCATCACGACTCATGCAGCCTCGACTTCCTGGGTTCAAGTGATCCTCCTGCCACAGCCTCCTGAGTAGCTGGGGCTACAGGTACCACCATGCCCAGCTATTTTTTTCTTTTTTTCTTTTTTTGGTAGAAATGGGATCTCGCTATGTTGCCCAGGTTGGTCTTGAGCTCCTGGGCTCAAGTCATCCTCCTGCTTTTGCCTCCCAAAGTGTTGGGATTATAGGCGTGAGCCACTGTGCCCAGCCATCCCAGAGCTTTTGACTCCTCAATTCCAGACTTTAGTTTTAATACGGAAAAATCAGTATTCATTTATTCATTTATTCATTCATTCAGTTGACGCTTAGCTTTTTTTTTTTTTTGAGACGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGTAGTGGCGTGATCTCAGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGTGATTCTGCTGCTTCAGCCTCCCAAATAGCTGGGGCTACAGGTGCCCACCACCATGCCCGGCTTTTTTTTTTTTTTTTTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATCTTGGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGAGGCATGAGCCACTGCGCCTGGCCAACACCCAGCTAGCACACTTGCTAGTCCAGGCAGAATCCAGGACTCAGCATTCCAGGTGGTGGCATCATGGTGGTCCCAAGGCCCCGCTGGCTGGCACCAGGGATGGTCACCCCTCAATTAGCTCAGGCTGCTCACCGCTCTTATGGTTCCCCAGTGCCTGGGCCAGCAAGCCCAGGCAAGTCCTGAGGGATCAGAAGGATCTCAACACCCATTTTCAGCACCACGGCAGGCCTCGCAGATGCCTCAAGCCACCCGGTTGGTCCAACACATTCCTTTCCTCCCACGGGTGGTGGAAGCCAGGGCCCCCTCTGCTCTCTTACTGACTTGACCAAAATTCCTGGGGCCACACCCCCCCAAGACTTGACAAATGGGATGACCTTAGTCGTTGGAGATCCTGGCCCTCCTGTCCCAGGTCCTCCCACTTGGAGGGCCACTACCCTTGCCCCTCCAGGTGTGGGTGTAGGAGCGGGATACCCGTCCCGTGGGCGTTGATGTAGGGTGTTGCCCACTCCCGTCCCTTAAACTCCGTTGCTCTTTCAGGGAAAGAGGAGACAGGCCTAGTCAGCTCTGGCAGCCGCCAGGCAGGGGGCGGACCCCCGACCCAGGGGGCCTTCTTGAAACTGCTTTATTTTACCCCCTGTTTCCAGAGCCTCACCCCCTACTTGGGCCCATCAGTTTTGGGGAGATGCTGTCTGCAGCTGGGCAGCGCCAGAAGGCCTGTGACAGCACAGCATCTCTTTCTGGGCAG
Seq C2 exon
GCTTTCCCTTCAGCAGGCCTTTCTGGGCCCCTCAAGCGCACGGCAAGGGTGAGGCCTCGGGCTCCAGCCGGCAGGCAGGAGATGAGAAGGAGTGGAGAGGCGCGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122386-ZNF205:NM_001042428:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.737
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(94.9=90.2)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)