GgaINT0099974 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BVL4]
Coordinates
chr2:501796-503006:-
Coord C1 exon
chr2:502880-503006
Coord A exon
chr2:501907-502879
Coord C2 exon
chr2:501796-501906
Length
973 bp
Sequences
Splice sites
5' ss Seq
TGTGTAGGC
5' ss Score
-1.07
3' ss Seq
TTTGTCTTGTCCTTGAGCAGACT
3' ss Score
6.37
Exon sequences
Seq C1 exon
GTGCCGGTGACTTTCAAGGATGTCTTTGTGGAGTTCAGCGGGGACGAGTGGGCCCTCCTGGATGATGAGCAGAAGGAGCTGCATCGGAGCGTGATGCAGAGCAACTGTGAAATGCTGTTGTCCCTGT
Seq A exon
GTAGGCATCTGCGCTGGTTTGGCGTTTGCCATCGCCGTCTGGGCTGCTCTCTCTGGGTTGCTTTCCTTTACCCCTCACTGGGATCTCCAGCCCCAAACAGTCAGCTCCAATTCTTGTCACCGCTGGGAGCAAGTGGAGGCTGGGAGGCTCAGGAGGGGGTAGAAAGTGCTCAGTGTCTTCTCCTTGTGGAGAGCTGGGGTGCCGTCTTCTCTGAGTTGCCATACAGATTTGCACTGCCAAGATCTCTGTCAGGTTTCCTGTTAGTATTCCATGGTGTCGTATGGTATGGAATATCTCTCTCTGGCCACTTTAGATTCTTTCCCCTCCCAGCTCCTCGTGCTGCCAGCCCATTTGCTGGTAGGACAGTATGAGAAGCTGAGAAGGCCAAATGTGTGTGCAGCACTGCTCAGCAACAAGTGAGACATCGCTGTGTTACCATCACTGGTTTTCTCCTAAAGCCGAAGCAATGTATCGTACCAGACACTAGGAAGAAAATCAGCTCTGCCCAACCTGAAACCCTCATGCTTGTCAGTAATTCTACCCAGTGCTGAGACGAAGGGAGCAGAGGGCTTGGATTTCCCTGCAGCTAGTGCCCACTTAGCATCTCGTGGGCTCCCCTCCAAGTGCAGCCCAGGTGAAAAATGAGGCACAAGCTGAATCCTGCAGCAGGGCAGATTGTTTTCCTGCGCTTCAGGGTGCTTTACACCTGTTGTAAGGGGTAATTCTGGGAGAACAGGTTTCTGTAGCAATCCTAGGTGGAGCAGGGATGGATTGTCAGATGAGCCTGAGGGCACTTTTCAGATCCTCCATAGAACTCCCTGCCTTTGCTCATAACTCCTCACGTGCAGCTTATTTGGAGATGAGGTTTTGATGGATGGGGACGGGGCTGTATGATGACAGCACATGCAGAAGACAGTGGATGCACCTGCAAAGATGCTGTCATGTCTCTGATGTTTGTCTTGTCCTTGAGCAG
Seq C2 exon
ACTGTGACCTAGCCAAGCCTGAAGATTTATTGCAGATGGAAAGAGGAGAGCCATGCGTGCCAGCAGAGCCAGACCTGGAGGGCACAGCGGTGTCCCTGAAGCCGGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019710:ENSGALT00000007819:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=NA C2=0.684
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGGTGACTTTCAAGGATGT
R:
CACCCGGCTTCAGGGACA
Band lengths:
233-1206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]