BtaINT0007296 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr18:65442671-65445944:-
Coord C1 exon
chr18:65445814-65445944
Coord A exon
chr18:65442751-65445813
Coord C2 exon
chr18:65442671-65442750
Length
3063 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
TGGACCACCAGGGAAGTTCCTTT
3' ss Score
-31.12
Exon sequences
Seq C1 exon
GAAGTGCAGTGTGACCTTTGAGGATGTGGCTGTGTACTTCTCCTGGGAGGAATGGAGACTCCTTGCTGAGGCCCAGAGAAGCGTGTACCTCGATGTGATGCTGGAGAACTATGCACTTATAGCTTCACTGG
Seq A exon
GTAAGACTCTCATAGCCTTCCCAGTGACCTGGACTAGGCTCTGTCCCATCTCACCCCCCTTTCCTCAGGGGGTGCTCTGTTCTTCTACATGTGGACAGTGAGCACTGCTTGTTTCCCAAGCTTTCTGAGTTGCTGTGATAGCTAGCTAGGACTGGGTTGTTTGCACTGCCCTCTTCTTTCCCCTGCAGTACCAACCGGAGTACCTGTTGTACAGAATGCTGTTAGGAAAAAGATTCCAAGTCAGCAGTATTACAGTAAACTTAATGGATTCTACCTTACTCCCCTCTCTCTATCCGGGTCAGTGTGTCTAGATCCTTGTCAACTCTGTCCCTTCTTTTATGCTGAGTTGTGCAGCTTGTGGGATCTTAGTTTACTGACCAGGGACTAAATCAGGGCCCTGGCAGTGAAAGCTTGGAGTCCTGGTCACTGGACTGCTAGGGAACTCACTTGATCCCTTCTTTTTAGCTAACATTTCTTTGTGCCTGCTTGTGCTGAACCATGAGCTACTTCTCAGTGTCCTCCAAGGTTGGTAGTGTTTAGATTTGCTTTCTCTTTTTTCCCCAGCCTTGTCCAGATATAAAATTGTATATCTTGATGTGGTAAAGTTTTGACTTGATGTATGAATACAGTATGAAATAATTGTCACAGTGAAATTAGTTAAACATCTGTCACCTCATTAAGTTACATTATTGTTGTTACTGTTGTTATACAACATCATTTTTTGTTAATATTTATTTAGGCTGTTCCAGGTCTTAGTTGCGGCACTCAGGATCTTTGATCTTCGTTGCAGCATGCAGGCTCTTTCTCTGTGTCATTTGTGATCTAATTCCCTGACCAGGGATTGAACCCAGGCCTCCTGCTTTGGAATGGCAGAGTCCTAGCCACTGAACCACCAGGGAAGTCCCAGCATCATTGTTCACTATAGTCACCGTGCTTTATATTACGTCCTCAGAACTTACTAATCTTATAACTGAACATTTGTGCCTTTTGACTAAAATCCCCCTATTTTCCATATTCCCCAGCTCCTACCATTTTACTCTGTTTCTATGATTTTCCCTTATTTAGTTTTTAAAAATTACAGCCATAGTGGACAAAGATGTTTCCTTTAAATCTGTGCCCTCACCAATCTCTGCTCTTTTTTTCCTTTTCTTTTTTTTCCCCTGCTCTTTTTTGACAGTAGCCATCTTATCAGGTAGATTTCCCTAAAGTTTAGATGGTAAAGAATCTCCCTGCAGTGCAGTTTGATCCCTGGGTTGGGAAGATCCTCTGGAGAAGGGAATGGCAATCCACTCCAGTATTCTTGCCTGGAGAATCCCATGGACAGAGGAGCCTGGAGGGCTACAATCCATAGGATCACAAAGAGCCGGACACGACTGAGCAGCTACTACTGCATCTTACCAGATGTGAGGTATTATCTCATTGTGGTTTTGATTTGCATTTTCCTGATGGTTAGTGATGGCACCCCACTCCAGTACTCTTGCCTGGAGAATCCCATGGACGGAGGAGCCTGGTGGGCTGCAGTCCATGGGGTCGCTAAGAGTCAGACGTGACTGAGCGACTTCACTTTCACTTTTCACTTTCATGCACTGGGGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACAGCGGAGCCTGGTGGGCTGCCATCTCTGGGGTCGCACAGAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGTATGTGGGATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATGTCCTTCTCCAGGGAGTGTTCCCAACTCAAGGATCAAAACCAGGTCTCCTGCATTGCAGGCAGGTTCTTTACCGTTTGAGCTACCAGGGAAGCCTACTTTTAGCTTAATTTTAATTAACTTATTTATTTTTGGCTGCACTTGTTCTGTGTTGCTGCATGCAGGCAAGTGGAGGCTACTCTCTAGTTGCAGTGCGCAGGTTCTCAGTAGTGGCTTCTATTCTTTTGGCTCATGGGCTCTAGAGCACAGTCTCATTAGTTGCCAGCTCATGGGCCTAGTTGCCTCAAGGCTTGTGGAATCTTCCTGGACCAAGGATTGAACCCATATCTCCTGTAATTGGTAGGTGGATTCTTAACCACTGGACCACCAGGGAAGTTCC
Seq C2 exon
TTTTCTCACTTTTTAAACAGATTGTTCTTTTCCTGTTGAATTGTAGAGAACCTTATATATTGAATACTTCAGATATTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038088:ENSBTAT00000055325:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=97.6)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development