HsaINT0188063 @ hg38
Intron Retention
Gene
ENSG00000083814 | ZNF671
Description
zinc finger protein 671 [Source:HGNC Symbol;Acc:HGNC:26279]
Coordinates
chr19:57722316-57723340:-
Coord C1 exon
chr19:57723214-57723340
Coord A exon
chr19:57722439-57723213
Coord C2 exon
chr19:57722316-57722438
Length
775 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CTGTTCTGACTTTCCCTTAGGAA
3' ss Score
10.68
Exon sequences
Seq C1 exon
GGCTGTGTGGTCTTTGAGGATGTGTTTGTATACTTCTCTCGGGAAGAATGGGAGCTTCTTGATGATGCTCAGAGACTTTTGTACCATGATGTGATGCTGGAGAACTTTGCACTTTTAGCCTCACTGG
Seq A exon
GTAAGGTCCTCATGCTTTTCTGCCTTTACCACTCTGTTCTTCCTATGGTGGGATCATGAGCACCGCTTCCTTCACCAGTTTCCTGGAGTAGGTGCTCAAGATGCCAGGGCTAAGCTGTATGGAGTGTCCTCCCTACTTGCTGAGTAGTCCTGAAGCCGTGCAGCCAAGGGTTTGGGGTCATGAGACTTGTGGTTTGCCCAGTGGATCTCACTAGGTCTGTTCGCTTTCTGTACTGGTGACTCTGTCCAAAATTATGATGCCTCTGTGCCCAAGGTTCTGTCCCTTTCTCCAGGTGACATTTTCTTTTCTTTTTTTTTTTGAGTCAGGGTCTGGCTCTGTTGCCCAAGCTGGAGTGCAGTGGCATGATCTCAGCTCATTGCAACCTCTACCTCCCAGGCTCAAGCCATCCTCTCATCTCAGCCTCCTGAATAGTTGGGACTACAGACACACACCACCACGCCCAGCTAATTTTTCTGTAGAGATGTGGTTTTGCCATGTTGCCCAGGCTGGTCTTGAACTCCTGAGCTCAAGTAATACCCTGACTTGACTTCTGAAAGTGTTAGATTACAGGTGTGAGCCACTGCGCCCAGCTCAGGTGACATCTTCTAGGGCCTGACCTTGTCAGGAGTTATAGGCACTTACATAGTCACTTATAGGGACCTTTGGGTTATTCCTGCACAACTCCTCCCAGGTTATTTTTCTTACCTGAAGTCCATCATAGGGTGGTTTGCCATGGGCCAGTGCTGGCTGCTCACCTGTTCTGACTTTCCCTTAG
Seq C2 exon
GAATTGCATTTTCCAGATCACGTGCAGTCATGAAACTAGAGCGAGGAGAAGAGCCCTGGGTGTATGACCAGGTGGATATGACTTCAGCCACAGAAAGAGAGGCCCAGAGGGGACTTAGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000083814:ENST00000317398:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.313
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGTGTGGTCTTTGAGGAT
R:
CAGGTCTAAGTCCCCTCTGG
Band lengths:
250-1025
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains