HsaEX0074327 @ hg38
Exon Skipping
Gene
ENSG00000197128 | ZNF772
Description
zinc finger protein 772 [Source:HGNC Symbol;Acc:HGNC:33106]
Coordinates
chr19:57475660-57477551:-
Coord C1 exon
chr19:57477277-57477551
Coord A exon
chr19:57476634-57476672
Coord C2 exon
chr19:57475660-57475786
Length
39 bp
Sequences
Splice sites
3' ss Seq
AGTCTCCCTCTTCCCCACAGGTT
3' ss Score
11.36
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ATCCTCGGGTGGACATTTTGTTTGCTTTTCCATTAATCCACTGGTTTAGTTTCCAGAACGCAATGTCAGACCTGAGGTGACAGAAAAGGGAAAACGTGAGAGAGTGTCTTCTTCCCTGAAGAGAGGTGGGCCTGAGGCTTGACAGTGGCGCTGCCTGAGTGACCTAGCCGCTGGGCTGGGCCCTGGACAGCTGATCCCAGGTTCCTGCACTTGTCGCCACCCTTCCGTAGTCCACAGGCCTGATGGCGGCGGCTGAGCCGATGGGCCCGGCACAG
Seq A exon
GTTCCCATGAACTCAGAAGTAATTGTGGACCCTATACAG
Seq C2 exon
GGGCAGGTGAACTTTGAGGACGTGTTCGTGTACTTCTCCCAGGAGGAGTGGGTGCTCCTTGATGAGGCTCAGAGGCTCCTGTACCGTGATGTGATGCTGGAGAACTTTGCACTTATGGCCTCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197128-'0-1,'0-0,1-1=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.616 A=0.288 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCCAGGTTCCTGCACTTG
R:
ACACGAACACGTCCTCAAAGT
Band lengths:
114-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development