HsaEX0074328 @ hg38
Exon Skipping
Gene
ENSG00000197128 | ZNF772
Description
zinc finger protein 772 [Source:HGNC Symbol;Acc:HGNC:33106]
Coordinates
chr19:57475024-57476672:-
Coord C1 exon
chr19:57476634-57476672
Coord A exon
chr19:57475660-57475786
Coord C2 exon
chr19:57475024-57475146
Length
127 bp
Sequences
Splice sites
3' ss Seq
GGCTCTCCTGATTGTGGCAGGGG
3' ss Score
4.39
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GTTCCCATGAACTCAGAAGTAATTGTGGACCCTATACAG
Seq A exon
GGGCAGGTGAACTTTGAGGACGTGTTCGTGTACTTCTCCCAGGAGGAGTGGGTGCTCCTTGATGAGGCTCAGAGGCTCCTGTACCGTGATGTGATGCTGGAGAACTTTGCACTTATGGCCTCTCTGG
Seq C2 exon
GACATACATCTTTCATGTCCCACATAGTTGCCTCACTGGTGATGGGTAGTGAGCCCTGGGTACCTGACTGGGTGGACATGACCCTAGCTGTTGCCACAGAGACTCCAGGTGGGAGTGACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197128-'1-3,'1-1,4-3=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.288 A=0.000 C2=0.060
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACTCAGAAGTAATTGTGGACCC
R:
TCCCACCTGGAGTCTCTGTG
Band lengths:
146-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development