BtaEX6084459 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000040358 | ZNF772
Description
zinc finger protein 772 [Source:HGNC Symbol;Acc:HGNC:33106]
Coordinates
chr18:64858451-64862504:-
Coord C1 exon
chr18:64862427-64862504
Coord A exon
chr18:64859081-64859207
Coord C2 exon
chr18:64858451-64858573
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGCTCTCCCCATTGTGGCAGGGG
3' ss Score
6.59
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
CCTGTCGCTCTGCAGCCACTCGCCTTCCCCAGTCCGCAGGTGCCGATGGCGGCCGCGGTGCTGACGGACCCGGCGCAG
Seq A exon
GGGAATGTGACCTTTGAGGACGTGTTCGTGTCCTTCTCCCAGGAGGAGTGGGGGCTGCTTGATGAGGCTCAGAGGCTCCTGTACCGCGAAGTGATGCTGGAGAACTTTGCACTGATGGCCTCACTGG
Seq C2 exon
GATATGCATCTTCCATGTCCCATGGGGTTTCCCCACAGGAGCTGGGCAGGGAGCCCTGGGTCTCTGACTGGGCCAACACAATTCCAGCCCTGACCAGAGAGGCTCAGAGTGCAGGTAGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040358-'3-5,'3-3,5-5=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.000 C2=0.190
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCGCTCTGCAGCCAC
R:
CTACCTGCACTCTGAGCCTCT
Band lengths:
195-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]