HsaEX0074220 @ hg38
Exon Skipping
Gene
ENSG00000147789 | ZNF7
Description
zinc finger protein 7 [Source:HGNC Symbol;Acc:HGNC:13139]
Coordinates
chr8:144829478-144837507:+
Coord C1 exon
chr8:144829478-144829604
Coord A exon
chr8:144830931-144831029
Coord C2 exon
chr8:144837391-144837507
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTTCTAATGTTTCTTCACAGCTT
3' ss Score
9.37
5' ss Seq
TTCGTAAGT
5' ss Score
9.77
Exon sequences
Seq C1 exon
GAGGTGGTAACATTTGGCGATGTGGCTGTGCACTTCTCTCGGGAGGAGTGGCAGTGTCTGGACCCTGGCCAGAGGGCCCTCTACAGGGAAGTGATGCTGGAGAACCACAGCAGTGTGGCTGGACTAG
Seq A exon
CTTTTAGTGACCCCACTCTCTGGTTTGGTTATCTGTGTCCATGCTTTCCACGTGATGGCAACCTGTGGGCCTGGCCATCTAGAGGTGCTGCAGCTTTTC
Seq C2 exon
CAGGATTCCTGGTTTTCAAGCCTGAGCTGATCTCTCGGCTGGAGCAGGGAGAAGAGCCATGGGTCCTCGACCTGCAGGGAGCAGAGGGGACAGAGGCACCAAGGACCTCCAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147789_MULTIEX1-5/5=4-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=0.000 C2=0.452
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGCTGTGCACTTCTCTC
R:
GAGGACCCATGGCTCTTCTCC
Band lengths:
176-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development