HsaEX0074218 @ hg38
Exon Skipping
Gene
ENSG00000147789 | ZNF7
Description
zinc finger protein 7 [Source:HGNC Symbol;Acc:HGNC:13139]
Coordinates
chr8:144827464-144837507:+
Coord C1 exon
chr8:144827464-144827886
Coord A exon
chr8:144829043-144829090
Coord C2 exon
chr8:144837391-144837507
Length
48 bp
Sequences
Splice sites
3' ss Seq
CCTTTCATAATTGCCAACAGGTC
3' ss Score
8.36
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
Exon sequences
Seq C1 exon
AGGCGGGGCTGAGAACCACAGAGATGGCCGGGCCTCCGAGCGGCCCAGGGCGGCCGGAAGTTTGCGGGGCGGGGCGGACGCGGGTGGCCAAGGCCCGTTTCCGGCGGCGTCGCGCGTTTGCGAGCCTCGGGTGGTCCTCAGGGAGGGTGAGTCGGCGCGGCGGGCGCGGACTCGGGTTGCCCTCGGTCCGAGTGATCCCTGGTCGCTTCCTTAGCCCTCCCGCCTTCGGCATTGGGGTCCCCGCGTCCCCCGGGCCTCCAGGCGGGAAAGCGCGGGGGCTTTGCGGGGCCTTGAGCGCCTGGTGTGGGAGGTGGTCGAGCCCAGCCACCCTCCCCCGCGGCGGCGCGAGGTGGGCTTCGTTTGGCCGAGTCTCGCAGCTCCCCGCAGACCCCGCTCGTGGCGGCCACGGTGTCCGGGGCCTGA
Seq A exon
GTCTCTCGGCCAGAACACGTGGATGCCCACCCACCACTGAGCCTCATG
Seq C2 exon
CAGGATTCCTGGTTTTCAAGCCTGAGCTGATCTCTCGGCTGGAGCAGGGAGAAGAGCCATGGGTCCTCGACCTGCAGGGAGCAGAGGGGACAGAGGCACCAAGGACCTCCAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147789_MULTIEX1-3/5=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.452
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGTTTGGCCGAGTCTCG
R:
GAGGACCCATGGCTCTTCTCC
Band lengths:
137-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development