HsaEX0074218 @ hg19
Exon Skipping
Gene
ENSG00000147789 | ZNF7
Description
zinc finger protein 7 [Source:HGNC Symbol;Acc:13139]
Coordinates
chr8:146052903-146062892:+
Coord C1 exon
chr8:146052903-146052994
Coord A exon
chr8:146054428-146054475
Coord C2 exon
chr8:146062776-146062892
Length
48 bp
Sequences
Splice sites
3' ss Seq
CCTTTCATAATTGCCAACAGGTC
3' ss Score
8.36
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
Exon sequences
Seq C1 exon
CGGAAGTTTGCGGGGCGGGGCGGACGCGGGTGGCCAAGGCCCGTTTCCGGCGGCGTCGCGCGTTTGCGAGCCTCGGGTGGTCCTCAGGGAGG
Seq A exon
GTCTCTCGGCCAGAACACGTGGATGCCCACCCACCACTGAGCCTCATG
Seq C2 exon
CAGGATTCCTGGTTTTCAAGCCTGAGCTGATCTCTCGGCTGGAGCAGGGAGAAGAGCCATGGGTCCTCGACCTGCAGGGAGCAGAGGGGACAGAGGCACCAAGGACCTCCAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147789_MULTIEX1-4/6=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.450
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGTGGTCCTCAGGGAG
R:
CTGTCTTGGAGGTCCTTGGTG
Band lengths:
136-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)