MmuEX0053563 @ mm10
Exon Skipping
Gene
ENSMUSG00000033669 | Zfp7
Description
zinc finger protein 7 [Source:MGI Symbol;Acc:MGI:99208]
Coordinates
chr15:76879259-76881238:+
Coord C1 exon
chr15:76879259-76879353
Coord A exon
chr15:76880739-76880782
Coord C2 exon
chr15:76881112-76881238
Length
44 bp
Sequences
Splice sites
3' ss Seq
CTCGTTATGATTTCTCACAGGTG
3' ss Score
8.55
5' ss Seq
ATGGTAGGG
5' ss Score
5.88
Exon sequences
Seq C1 exon
GCGAGCGGAAGTCGCCCGGGTGGGGCACAGTGGGATAAGCTTGCAAAGCCCTTTCCGGTGGCTCTCTTGTTGGGATCCACCACGCGCCGGGGCAG
Seq A exon
GTGTCTGACTCAGGACAAGCGGATCCCACCCTCCAGATCTCATG
Seq C2 exon
GAGGCGGTGACCTTTGGCGACGTGGCTGTGCACTTCTCTCGAGAGGAGTGGCAGTGTCTGGATTCTGGTCAGAGGGCCCTCTACAAGGAGGTGATGCTGGAGAACCACAGCAGCGTGGCAGGACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033669_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTGTTGGGATCCACCACG
R:
CTGTGGTTCTCCAGCATCACC
Band lengths:
142-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types